Paenarthrobacter sp. YJN-D: HMI60_08555
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Entry
HMI60_08555 CDS
T10599
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMI60_08555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
payn03019
]
HMI60_08555
03400 DNA repair and recombination proteins [BR:
payn03400
]
HMI60_08555
Enzymes [BR:
payn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMI60_08555
Messenger RNA biogenesis [BR:
payn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMI60_08555
DNA repair and recombination proteins [BR:
payn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMI60_08555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF7343
Helicase_RecD
Cas3-like_C_2
PcrA_UvrD_tudor
DUF3553
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QOT21570
LinkDB
All DBs
Position
1804602..1806305
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AA seq
567 aa
AA seq
DB search
MQVAAGTTKRSHLSMSVDLALTALAASSFSLPELRDGQLAGMSALAEGRDVLAVMPTGYG
KSATYQVAALHLHQQTKRPAVVVSPLIALQEDQLEGLAGDLGEGSAVAINSSRSDSEVEA
AWQAAESGQAVFLFLAPEQLARQETVDRIATLDISMFVVDEAHCVSAWGHDFRPDYLELG
NVRERLGNPPVIALTATASPPVRDEIVQRLGMRDPLVLVRGFDRPNISLDVIRHQEDKAK
RKAVVEQVVELSASKGMGLLYAATRKDTEKYAAKLTERGLRAEAYHAGRTDADRESIHER
FLDDQLDVVVATTAFGMGIDKPNVRFVVHADIPESLDSYYQEIGRAGRDGKAAAAILHYR
AEDLGLRKFFGTHSPDPDALKTILKVIRNAGGPAPKSALVELTGFPARRVTGLVNQLEEA
GAVKTGKRGTRLISRAKPATLVNRAVDLAESRQRVDQSRLTMMRAYAETDACRRQFLLGY
FGEELPEPCGNCDSCAEVQQEAPGSGNPAAPGGEEQFPLQSTVVHKEWGPGLVMRHEDDV
ITVLFEQEGYKTLSRTAVVEHELLKPA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtggccgcaggaaccaccaagcggagccatctttccatgtcagttgaccttgcc
ctgactgcccttgcggcgtcctccttttcccttcctgagttgcgcgatggccaactcgcc
ggcatgagcgcccttgctgagggccgtgatgttttggcagtcatgccgaccggatacgga
aaatctgccacctaccaggtagcggcacttcaccttcaccaacaaaccaagcgccccgcc
gtcgtggtttctcccctcattgccctgcaggaggaccaactggagggccttgccggggac
ctgggggagggttccgccgtcgccataaattcgtcccgcagtgactctgaagtggaggcc
gcctggcaagcggccgaatccggccaggctgtcttcctttttctcgcgccggagcaattg
gccaggcaggagacagtggaccggatcgccacgttggacatctccatgttcgtggtggac
gaggcccattgcgtctccgcgtggggccatgacttccgccccgactacctggagctgggc
aacgtccgcgaacggttgggcaacccgccggtgatagcgctgacggcaacagcatccccg
ccggtccgcgatgaaatcgtccaacggcttggcatgcgcgatcctttggtcctggtccgg
gggttcgacaggcccaacatcagcctggacgtcatacgccaccaggaggacaaggccaag
cgcaaagccgtggtggaacaggtagtggagctgtccgcgtcgaaggggatggggcttctg
tacgcggctacgcgaaaagacaccgaaaagtatgctgccaaactgaccgaacggggcctg
cgtgctgaggcctatcacgcgggcaggacggacgcggaccgcgaaagcattcacgagcgc
ttcctggacgaccaacttgatgtggtggtcgctacaactgcttttggcatgggcatcgac
aagcccaacgtcaggttcgtcgtgcacgcggacatccccgagtcactggactcgtactat
caggaaatcggccgggcgggccgtgatggcaaagctgctgcggccatcctgcattaccgg
gccgaggacctgggcttgcgcaagttcttcggtacccattcgccggaccctgatgccctc
aaaacgatcctgaaggtgatcaggaacgccggtgggccggctccgaagagcgccctggtg
gaactgacgggattccccgcccggcgggttaccgggctggtcaaccagttggaggaggcc
ggcgcggtgaaaaccggcaagcgcggcacccggctcatttccagggcaaaaccggctacg
ctggtcaaccgcgctgtggatctggccgagtcacggcaaagggttgaccagtcccggctg
accatgatgcgggcttacgctgagacggatgcctgccgccgccagttcctgttgggctac
ttcggggaggagctgccggagccctgcggcaactgcgattcctgcgctgaggtccaacaa
gaggccccgggttccggcaaccccgcggccccgggcggcgaggaacagttccccctgcag
tccaccgtggtccataaggagtgggggcctggcctggtgatgcggcacgaggacgacgtc
attactgtcctgttcgaacaggagggttacaagaccctgtcccgtaccgccgtcgtggag
catgagctgctgaaaccggcctag
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