Paenarthrobacter sp. YJN-D: HMI60_11625
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Entry
HMI60_11625 CDS
T10599
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMI60_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
payn03019
]
HMI60_11625
03016 Transfer RNA biogenesis [BR:
payn03016
]
HMI60_11625
Enzymes [BR:
payn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HMI60_11625
Messenger RNA biogenesis [BR:
payn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMI60_11625
Transfer RNA biogenesis [BR:
payn03016
]
Prokaryotic type
tRNA degradation factors
HMI60_11625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
PCB_OB
S1_RRP5
DUF2017
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QOT22133
LinkDB
All DBs
Position
2495663..2497915
Genome browser
AA seq
750 aa
AA seq
DB search
MEGPEIQFSEAIIDNGRFGKRVIRFETGRLAKQAAGASMVYIDEDTALLSATTAGKQPRE
GFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQ
IVVTVLAINPDELYDVVAINASSMSTQLSGLPFSGPIGGVRVALIADEQGSQWVAFPKHS
QLENAVFNMVVAGRIAGDDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPF
IKALCEAQADLAARAAKPTVEFPVFLDYQDDVYAAVEAAAADKLAAVFQIADKQERDNAS
DELKDEVLGALAGDFEGREKELSAAFRSVTKHVVRQRILKDQVRIDGRGLTDIRQLTAEV
EVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETG
RVGSPKRREIGHGALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSML
NAGVPLKAAVAGIAMGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQL
DTKLDGIPASVLAAALKQAREARLHILEVINAAIDTPDELSEFAPRVIAVKIPVDKIGEV
IGPKGKMINQIQEDTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYL
GTVVKTTTFGAFVSLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDR
GKLSLSPVVADEEGASAEEAPAEAAEASAE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatccagttctccgaagccatcatcgacaacggccgttttggcaag
cgcgtcattcgctttgaaacaggccgccttgccaagcaagcagccggcgcctcgatggtc
tacatcgacgaagacaccgcacttctctccgcaaccaccgcaggcaagcagccgcgtgaa
ggtttcgacttcttcccgctgaccgtggatgtcgaagagcgtatgtacgctgccggccgc
atcccgggttcgttcttccgccgcgaaggccgcccctccacggaagccatccttgcttgc
cgcctgatggaccgcccgcttcgcccggcgttcgtcaagggcctgcgcaacgaggtccag
atcgtcgtcaccgtcctggcgatcaaccccgatgagctgtacgacgtcgtcgccatcaac
gcgtcctcgatgtccacccagctttccggcctcccgttctccggcccgatcggcggcgtc
cgtgttgccctcatcgccgacgagcagggttcgcagtgggttgctttcccgaagcactcc
cagctcgaaaacgctgtcttcaacatggttgtcgccggccgtattgccggtgacgacgtc
gccatcatgatggttgaagccgaagccacggacaactcctggaacctcatcaaggaacag
ggcgcaaccgctcccaccgaagaggtcgtttccgagggcctcgaggctgccaagccgttc
atcaaggcactctgcgaagcacaggccgacctggcagcccgcgctgccaagcccacggtc
gagttcccggtcttccttgattaccaggacgacgtttacgccgctgttgaagccgctgcc
gctgacaagctggctgccgtcttccagatcgccgacaagcaggagcgcgacaacgcttcc
gacgagctcaaggacgaagtccttggcgcccttgccggtgacttcgaaggccgtgagaag
gaactgtccgcagcattccgctcggtcaccaagcacgtcgtgcgccagcgcatcctcaag
gaccaggtccgtatcgatggccgtggcctgacggacatccgccagctgaccgccgaggtc
gaggttctgccccgcgttcacggctctgccatcttcgaacgcggcgagacccagatcatg
ggtgtcaccacgctgaacatgctcaagatggaacagcagatcgactcgttgtcgccggta
acgcgcaagcgctacatgcacaactacaacttcccgccgtactccaccggcgagaccggc
cgcgttggttcccccaagcgccgcgaaatcggccacggtgccctcgccgagcgcgccctg
gttccggttctgcccagccgtgaagaattcccgtacgccatccgccaggtatccgaagca
ctcgggtccaacggttcaacctccatgggttcggtctgcgcttcgacgctttccatgctc
aacgccggtgttccgctgaaggcagccgtcgccggtatcgccatgggcctggtttccgac
caggtcgacggccagacccgctacgcagccctgaccgacatccttggagccgaagacgcc
ttcggcgacatggacttcaaggtcgccggtacgtccgagttcgtcacggccatccagctg
gacaccaagctggacggcatccccgcctccgtgctcgcagcagcactgaagcaggcccgc
gaagcccgcctccacatcctcgaggtcatcaacgccgcgatcgacaccccggacgagctc
tccgagttcgcaccgcgcgtcattgccgtgaagatccccgtggacaagatcggcgaggtc
atcggccccaagggcaagatgatcaaccagatccaggaagacacgggcgcggacatctcc
atcgaagatgacggcacggtctacatcggcgctacgaacggtccgtctgcagatgcagca
cgttcggccatcaacgccatcgccaacccgcaggtaccggaaatcggtgagcgctacctg
ggtacggtcgtcaagaccaccaccttcggcgccttcgtttcccttaccccgggcaaggac
ggcctgctgcacatctccgagctccgcaagctggccaacggcaagcgtgtggacaacgtc
gatgacgtcgtttccgtgggccagaaggtccaggtcgagatcaccaagatcgacgaccgc
ggaaagctctccctctcgccggttgttgccgatgaagaaggcgcaagcgcagaggaagct
ccggccgaggccgcagaagcttccgcagagtag
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integrated database retrieval system
