Paenarthrobacter sp. YJN-D: HMI60_13260
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Entry
HMI60_13260 CDS
T10599
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03420
Nucleotide excision repair
payn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMI60_13260
03430 Mismatch repair
HMI60_13260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
payn03400
]
HMI60_13260
Enzymes [BR:
payn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMI60_13260
DNA repair and recombination proteins [BR:
payn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMI60_13260
MMR (mismatch excision repair)
Other MMR factors
HMI60_13260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
QOT22425
LinkDB
All DBs
Position
complement(2864940..2868440)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSTELLDGVGASTFDGGAGTPEPRFTPSQLADILGEKNHPTSEQSDIISSALTPRLVIAG
AGSGKTATMADRVVWLVANGWVRPEEVLGVTFTRKAAGELASRIRSKLATLQRVAAEDDG
TIGFPADLLGADDLEPRVSTYHSYASGIVSDYGLRLGIERDVVLLGGAQSWQLASEVVEA
YDGDYEHFTAAKSTLVNGVIQLAGECAEHLQDPAMVREWVLERVQGFEQLPYVAGAKKNP
TQAAGELAAMLRTRASVADMVVRYQEAKRQRGVLDFGDLVALAARIARDIPLAAATERAR
YKVVLLDEFQDTSHAQLVLFSRLFGQGHAVTAVGDPNQSIYGFRGASAGQLFHFVQEFPV
VHKAAGEDSTSYSVAPTSYLTTAWRNGRNILQAANAIAAPLNKAAGAGAAAGEKTDSGAV
SVPPLVPSPAAVDGSVVIGRFGTDEDEAAAIVRDVRRYQRTVFEEEADGTPTKPTMAVLC
RRRAQMECLRREFELQGIAYEIVGLGGLLDTPEVVDVVATLRVLADPGRSDALMRLLAGA
RWRIGPADLMAFSDWSRFLARRRSAPDAQGEASETDEEASAVVVESDITDAASLVEALDY
LPRPGWTSGHGRSLSGAALDRLNTLAAELRSLRSFIGDDLTTLLGEVERAMLLDIEVAAK
PGVSIHQARRNLDAFQDAAANFLQTSQRIDLLAFLSWLEAAASEEGGLDVAPPETNREAV
QLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAAALPWPLRGDRADLPQWDLDQS
DQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVLWASSAAWNGSRSGIAGMSAFL
SELAPLAGLGQEGDGRCGIAAQADVHPDSVSEEALPDTSPLTTSLEIAQFPYDPLEGPSD
PRTGARLRLAPGRREAMDRAAAMVRAYMENPDIEHSSPPLGGAAGKWSQEAELLLDRQRR
RKAIHDIHLPSHISASLFVDLGDNPAAVLSQLRRPVPREPGISARKGTAFHAWVEEYFGT
TGMLDLDEAPGSDSHIDEAYGLDDMVAAFKQSEWAQRAPAFVEVPVETRIGDVVVRGRID
AVFRDADGRWQLIDWKTGRRPAGRQLATRAVQLAVYRLAWARLKDVPLEEVSAAFYYVAE
DAVVRPHDLGSAAELEQIVAEALKAK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgaactcttggacggtgtgggggcctccacattcgatggcggcgcgggtacc
cccgagccccgttttacgccgtcgcagctggcggacatcctgggcgagaagaaccacccc
acgtccgaacagtcggacatcatttcttccgcactgacgccgcgtctggtcattgccgga
gcgggttccggaaagaccgccaccatggccgaccgtgtggtgtggcttgtcgccaacggc
tgggtccgcccggaagaggtcctgggcgtgacgttcacccgcaaggctgctggagaactg
gccagtcgaatcaggagcaagctggccacactccagcgggtggccgccgaagacgatggc
accatcggattcccggcggacctgctcggcgctgatgatctggagcccagggtttccact
taccattcgtacgccagcggaattgtgtccgactacggcctgcggttggggatagagcgt
gatgtcgtcctgctgggtggcgcgcagtcctggcagttggccagcgaagtcgtagaggcc
tacgacggcgactatgagcacttcacagccgcaaagtcgacgttggtcaacggtgtcatc
cagttggcaggtgaatgcgccgagcatctccaggacccggccatggtgcgtgaatgggtg
ctcgaacgggtgcagggattcgaacagcttccctacgtggccggagctaagaagaacccg
acacaggccgccggggaactggcggcgatgctccggacccgggccagcgtggctgacatg
gtggtccgataccaggaagccaagcgccagcgcggggtcctggacttcggggacctggtg
gctctggctgcccggattgcgcgggacatccctttggcagctgccacggaacgcgcgcgg
tacaaggtggttctcctggacgagttccaggacacctcgcacgcccagttggttctgttt
tcgcggctcttcggccagggccacgccgtcaccgctgtcggtgatcccaaccagtccatc
tacggattccggggcgcttcggccggtcagctcttccatttcgtgcaggagttcccggtc
gtgcacaaggcggccggggaagactcgacgtcgtactccgtggcacctacgtcctacctg
accactgcctggcggaacggaaggaacatcctgcaggcagccaatgccatcgccgcgccc
ttgaacaaggctgcgggcgccggcgcagcggcgggggagaaaacggactccggggccgtt
tccgtcccgccgctggtacccagtcctgccgctgttgacggcagcgtggtcatcgggcgg
ttcggaactgatgaggacgaggctgccgcgatcgtccgcgacgtccggcgttaccagcgg
actgtgttcgaagaagaggccgacggtacaccgacgaaaccgaccatggcggttttgtgc
cgccggcgcgcccagatggagtgcctccgccgcgagttcgaactgcagggaatcgcttac
gagatcgtcggcttgggcggactgctggacaccccggaggtcgtggatgttgtggctacc
ctgcgcgtcctggctgatccaggacgttctgatgccctgatgaggttgcttgccggggca
cgctggcggattggtccggcggacctgatggctttcagcgactggtccaggttcctcgcc
cggcgtcggtccgccccggacgcacaaggtgaagcgagcgaaactgacgaggaagcatcg
gccgtggtggtggaaagcgatatcaccgacgccgccagcctggtggaggctcttgactac
ctgcccaggccggggtggacttccggccatggaaggagcttgagcggtgcggccttggat
cgcctgaacacccttgccgcggaactgcgctccctgaggagtttcatcggcgatgacctc
accacgctgctgggcgaggtggagcgggccatgctcctcgacatcgaagttgccgccaag
ccgggggtcagcattcatcaggcgcgacgaaacctggatgccttccaggacgccgcggcg
aacttcctccagacctcgcagcggatcgatcttctggccttcctgtcctggctggaggca
gccgcctccgaggaaggcggtctggacgtcgcaccgccggagaccaaccgcgaagccgtg
cagttgctgaccgtccacgcctccaagggcctggaatgggacgtggtcttcgtacccggc
ctcaacgcaggttcgttccccagcaacagggactcccggtggagtaccggcgccgcggca
ttgccgtggcccctgcgcggagatcgcgccgaccttcctcagtgggaccttgaccagtcc
gaccagaagggctggctggatgcagagaaggacttcaaatcggaagtccaacaccatggt
gaagctgaggaacgccgccttgcctacgttgcttacacgcgggcaaagttcgtcctatgg
gcctccagcgcagcgtggaatggttcgcgctcggggatagccgggatgtccgccttcctt
tcggagctggcgccgcttgccgggctggggcaggaaggtgacggacgttgtggcattgcc
gcgcaggccgacgtccaccctgattccgtgtcagaagaagccttgcccgacaccagccct
ttgacgacttcgctggagatagcccaatttccctacgatcctcttgaaggaccgtccgac
ccgaggaccggagcccgcctcaggctggcgcctggccgtcgggaggccatggaccgggcc
gcagcaatggtgcgggcatacatggaaaatcccgacatcgaacattcctcgccccccttg
ggcggtgcggccggaaagtggtcgcaggaagctgagctcttgctggaccggcaaaggcga
cggaaggcaatccacgacatccatctgcccagccatatctcggcgtcacttttcgtggac
ctcggcgacaaccctgcggccgtactgtcccagctccgcaggcctgttccccgggaaccg
ggaatctcggcgcgcaagggtacagcgttccatgcctgggtggaggagtacttcgggacg
acaggaatgctggacctcgacgaggcacccggctcggactcgcacattgatgaggcctat
gggctggatgacatggtggctgcgttcaagcagtccgagtgggcgcagcgtgctccggcc
ttcgtggaggtgcccgtggaaacccgtatcggtgacgtggtcgtccgcggcaggatcgat
gccgtgttccgtgacgccgatggccggtggcagttgattgactggaaaaccggacgacgt
ccggcaggaagacaactggcaacgcgcgcggtgcagctggccgtgtaccggctggcgtgg
gcgcggctcaaggacgtgcccctggaggaagtcagtgcagccttctactacgtggccgaa
gacgcagtggtgcgcccgcatgatctgggcagcgccgcggaacttgaacagatcgttgcc
gaggccttgaaagccaagtga
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