Paenarthrobacter sp. YJN-D: HMI60_14345
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Entry
HMI60_14345 CDS
T10599
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMI60_14345 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
payn03021
]
HMI60_14345 (rpoB)
03400 DNA repair and recombination proteins [BR:
payn03400
]
HMI60_14345 (rpoB)
Enzymes [BR:
payn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMI60_14345 (rpoB)
Transcription machinery [BR:
payn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMI60_14345 (rpoB)
DNA repair and recombination proteins [BR:
payn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMI60_14345 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QOT22620
LinkDB
All DBs
Position
complement(3091174..3094680)
Genome browser
AA seq
1168 aa
AA seq
DB search
MVASSTSNNETANTASTDGATRRLSFAKIHEPLDVPNLLALQTDSFDWLVGNERWQARVA
KAVEEGDLSVATTSGLADIFEEISPIEDFQGTMSLSFSEPEFADPKYTMAECKDRDATYS
APLYVKAEFMNNNTGEIKQQTVFMGDFPLMTEKGTFVVNGTERVVVSQLVRSPGAYFERT
ADKTSDKDIFTAKIIPSRGAWFELEIDKRDQVGVRLDRKRKQSVTVLLKALGWTEGQILE
EFGQYDSMRATLEKDATETREDALLDIYRKLRPGEPPTVEAAQSLLDNLYFNAKRYDLAK
VGRYKINRKLGIDRSLGDKEASVLHVEDIVAMIKFLVALHAGEKTIMGKRDGEDHELRVD
IDDIDHFGNRRIRAVGELIENQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
ETPEGPNIGLIGSLASYGRINPFGFIETPYRLVSNGVVSDEVQYLTADDEAEVLIAQANA
PLDADKKFSEETVLVRARGGGGEPVLVPAADVQFMDVSPRQMVSVATALIPFLEHDDANR
ALMGANMQRQAVPLVRSEAPFVGTGMERAAAVDAGDVVIAKKAGVVTEVSAELVVMINDD
GTETNYRINKFARSNQGNCYNHRVLVNEGQRLEVGGIIADGPATDQGELALGKNLLVAFM
SWEGHNFEDAIILSQRIVAEDVLSSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLAGL
DERGIIHIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGES
GTVIGVRVFDRDNDDELPPGVNQLVRVYVAAKRKITDGDKLAGRHGNKGVISKILPIEDM
PFLADGTPVDIVLNPLGVPGRMNVGQVLETHLGWVAKTGWKIEGEPEWVKNLPNLPRETG
QTTVATPVFDGAREEEITGLLDSTNVTRDGDRLIDSSGKTRLFDGRSGEPFPDPISVGYM
YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEL
LTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSTDGTTIEMR
DSDDAVFTAAEELGIDLSRAEPSSVEEV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgcctcgagcacctctaataacgaaaccgctaacacggcaagcaccgatggtgcc
acccgtcgcctctcattcgcaaagattcacgaaccccttgatgttccgaatcttctcgcc
ctgcagacggacagctttgactggctcgtcggaaacgaacgctggcaggcgcgggtagcg
aaggctgtcgaggagggcgacctcagcgtcgccaccacctccggacttgccgacatcttc
gaagagatctcccctatcgaggacttccagggcaccatgtccctgagcttctccgagccg
gagttcgctgacccgaagtacaccatggccgaatgcaaagaccgtgacgccacctactcg
gccccgctgtatgtcaaggccgagttcatgaacaacaacacgggcgaaatcaagcagcag
accgtgttcatgggcgacttccccctcatgactgagaagggaacgttcgtcgtcaacggc
accgagcgtgtcgttgtctcccagttggtccgttcgccgggcgcctacttcgagcgcact
gcagacaagaccagtgacaaggacatcttcactgcgaagatcatcccgtcccgcggtgcc
tggttcgaactcgaaatcgacaagcgcgaccaggtgggcgtacgccttgaccgcaagcgc
aagcagtcggtcacggttctcctgaaggccctcggctggaccgaaggccagatcctggaa
gagttcggccagtacgactccatgcgcgcaacgctggagaaggacgccaccgagacccgc
gaagacgcgcttctggacatctaccgcaagctgcgtccgggcgagccgcccacagtcgag
gctgcccagtccctgctggacaacctgtacttcaacgccaagcgctacgatcttgccaag
gttggccgttacaagatcaaccgcaagctcggcatcgaccgctcccttggtgacaaggaa
gcttcggtcctgcacgttgaagacatcgttgccatgatcaagttcctcgttgcgctccac
gccggcgagaagaccatcatgggcaagcgcgacggcgaagaccacgagctccgcgtcgac
atcgatgacatcgaccacttcggcaaccgtcgcatccgcgccgtcggcgaactgatcgag
aaccaggtccgcaccggtctttcccgtatggaacgtgtcgtccgcgaacgcatgaccacg
caggacgtcgaggccatcacgccgcagacgctgatcaacatccgtcccgttgtggcagcc
atcaaggagttcttcggaacctcccagctgtcgcagttcatggaccagaacaacccgctc
tcgggtctgacccacaagcgccgcctgtcggcacttggcccgggtggtctgtcccgtgac
cgcgcaggcatggaagtccgtgacgttcacccgtcccactatggacgtatgtgccccatc
gaaactcctgaaggcccgaacattggtctgatcggttcgttggcttcctacggccgcatc
aacccgttcggcttcatcgagaccccttaccgcttggtttccaacggtgttgtctcggac
gaggtccagtacctcacggccgatgacgaagccgaggtcctgatcgcacaggccaacgct
ccgctggatgccgacaagaagttctccgaagagaccgttcttgtccgtgcccgtggtggt
ggaggcgagcccgtcctggttcccgctgcagacgttcagttcatggacgtttccccgcgc
cagatggtgtccgtggcaacggcattgatcccgttcctcgagcatgacgatgccaaccgt
gcactcatgggtgccaacatgcagcgccaggctgtgccgctggtccgttccgaggctcct
ttcgtgggcaccggcatggaacgtgcagcagccgtcgacgccggtgacgttgtcattgcg
aagaaggccggtgtggtcaccgaggtttccgctgaactcgttgtcatgatcaacgacgac
ggcaccgagaccaactaccgcatcaacaagttcgcccgttccaaccagggcaactgctac
aaccaccgtgtcctggtcaacgaaggccagcgcctggaggttggcggcatcatcgctgac
ggtcccgcaacggaccagggtgagcttgccctcggtaagaacctgctcgtggcattcatg
tcatgggaaggccacaacttcgaggacgccatcatcctgtcccagcgcattgttgctgag
gacgtcctttcctccatccacatcgaggagcacgaaatcgatgcccgcgacaccaagctt
ggtgccgaggaaatcacccgtgacatcccgaacgtgtccgaggaagtcctggcaggcctg
gacgagcgcggcatcatccacatcggtgccgaggttgaagcaggcgacatcctggtaggc
aaggtcacccccaagggtgaaaccgagctgaccccggaagagcggctcctccgcgccatc
ttcggtgagaagtcccgcgaagtccgcgatacctcgctgaaggttccccacggcgagtcc
ggtacggtcatcggcgttcgcgtcttcgaccgcgacaacgacgacgagctgcccccgggc
gtgaaccagctggtccgcgtctacgttgcagccaagcgcaagatcaccgacggcgacaag
ctcgccggccgtcacggcaacaagggtgttatctccaagatcctcccgatcgaggacatg
cccttccttgcagacggtaccccggtggacatcgtcctgaacccgcttggtgttccgggt
cgaatgaacgttggccaggtcctggaaacccacctcggttgggttgccaagaccggttgg
aagatcgaaggcgagccggagtgggtcaagaacctcccgaacctgccccgtgaaaccggc
cagaccaccgttgccaccccggtgttcgatggcgcccgcgaagaagaaatcacgggcctg
cttgactccaccaacgtgacccgcgatggcgaccgtctgatcgactcctccggcaagacc
cgtctgttcgacggccgctccggcgagccgttcccggacccgatctccgtcggttacatg
tacatccttaagctccaccacctggtggacgacaagatccacgcgcgctccaccggcccg
tactccatgatcacgcagcagccgctgggtggtaaggctcagttcggtggccagcgcttc
ggtgaaatggaagtgtgggcgctcgaagcttacggtgccgcctacacgcttcaggaactc
ctcacgatcaagtcggatgacatccatggtcgtgtgaaggtctacgaagccatcgtcaag
ggcgagaacatccctgagcctggcgttcccgagtccttcaaggtcttgatcaaggaaatg
cagtcgttgtgcctgaacgtggaagttctttccaccgacggaaccacgatcgaaatgcgt
gactctgatgacgcagtcttcacggctgcggaagaactgggcatcgatctgtctcgcgca
gagcccagttccgtagaagaggtctag
DBGET
integrated database retrieval system
