Paenarthrobacter sp. YJN-D: HMI60_16020
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Entry
HMI60_16020 CDS
T10599
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
payn Paenarthrobacter sp. YJN-D
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
payn03032
]
HMI60_16020 (topA)
03400 DNA repair and recombination proteins [BR:
payn03400
]
HMI60_16020 (topA)
Enzymes [BR:
payn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HMI60_16020 (topA)
DNA replication proteins [BR:
payn03032
]
Prokaryotic type
DNA Topoisomerases
HMI60_16020 (topA)
DNA repair and recombination proteins [BR:
payn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMI60_16020 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QOT22923
LinkDB
All DBs
Position
complement(3466029..3468752)
Genome browser
AA seq
907 aa
AA seq
DB search
MPSKAKTGKKLVIVESPAKSKTIAKYLGEGFIVEASIGHIRDLPQPSDLPAELKKTSLGK
FAVDIENDFKPYYVVSPDKKKKVAELKAQLKDADALYLATDGDREGEAIAWHLLEVLKPK
VPVYRMTFGEITKEAIHRAMDNLRDVDTALVDAQETRRILDRLYGYEISPVLWRKVARGL
SAGRVQSVVTRMVVDRERERMAFRAASYWDLTGQFGAGSGSFKAKLAAVDGAKVASGRDF
NDNGQLTSSNVVHLNEELATSLASGLENADFRVRSVDTKPYTRRPAAPFTTSTLQQEAGR
KLRFSSKSTMQIAQRLYENGYITYMRTDSSALSDEALTASRRQAAELYGPEYVPQSPRVY
ANKAANAQEAHEAIRPAGDSFRTPAQVAKQLSGDEFRLYELIWKRTVASQMADAKGSTAT
IRLGAVAADGRDAEFSASGTVITFPGFLAAYEEGKDESRGDDESDEARRLPNVAKDDSLT
ASDIVAVGHETSPPPRYTEASLTAELEKRGIGRPSTYASTISTIQDRGYVRKQGSALVPS
WIAFSVIRLLEQHFTDYVDYEFTADMEGDLDKIANGQAAGTAWLKHFYYGEDADPGLLSI
VNNLGEIDAREINSVPIAEGITLRVGKFGPYLESSIPTVDEKTGEVVESARANVPEELAP
DELTAEKAKELMETAAPEERVLGTDPHTGHTVVAKNGRYGAYVTEIIPEMTEEQLANQPV
EYYKNGKPKPPKKPVKAKPRTGSLFKSMTVDSVTLDEALQLMSLPRVLGEDAEGNPITVQ
NGRFGPYLKKGTDSRSIGSEEEIFTITLDQALEIYSQPKQRGARAAVPPLAEFGPDPVSE
KNIVVKEGRFGPYITDGVTNITVPRSTSLEELTRERAVELLAEKRAKGPVKRTTTRKAPA
KKAAARK
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagcaaggcaaaaaccggcaagaaactcgtgatcgtggagtctccggccaagagc
aagaccatcgccaagtaccttggcgagggcttcatcgtcgaggcttccatcggccatatc
cgggatcttccccagccgtcagacctccctgcagaactgaagaagacttcgctgggcaag
ttcgcggtggacatcgaaaacgacttcaagccttactacgtggtgtctcccgacaagaag
aaaaaggttgccgagctcaaagcgcagctgaaagatgctgacgctctctacctcgcaacc
gatggggaccgcgaaggcgaagccatcgcgtggcacctcctggaggtcctgaagcccaag
gttcccgtataccggatgacctttggtgaaatcaccaaggaagccatccaccgggccatg
gacaacctgcgcgacgtcgacacggcgctggtcgatgcccaggaaacccgccgtatcctc
gaccggctctacggttatgaaatttcccccgtactgtggcgcaaagtagcccgcggactc
tcggcgggccgcgtgcaatccgtggtgacccgcatggtcgtggaccgtgaacgcgaacgc
atggccttccgggcagcctcatactgggacctgacggggcagttcggcgcaggatcagga
tccttcaaggccaagctcgccgccgtggatggtgccaaggtggccagcggccgcgacttc
aacgacaacggccagctcacgtccagcaacgttgtacatctcaacgaggaactggccacg
tctctggcgtcagggctggaaaacgctgatttccgtgtccgttccgtagacaccaagccg
tacacgcgccggcccgcagctccgttcacaacctcgacgttgcagcaggaagctggccgc
aagctccggttctcctccaagagcaccatgcagatcgcgcagcgcctgtatgaaaacggc
tacatcacctatatgcgtaccgactcctcggcgctgagcgatgaagcgctgaccgcttcc
cgccgccaggctgctgaactgtacggacccgagtacgtaccccagagcccgcgcgtttac
gcaaacaaggcggccaacgcccaggaagcccacgaagccatccgccccgctggtgactcc
ttccgcactccggcccaggttgccaagcagcttagcggcgacgaattccggttgtacgaa
ctcatctggaagcgcaccgtcgcctcgcagatggccgatgccaagggatccactgccacg
atccgcctgggcgcagttgccgccgatggacgtgacgcagagttctccgcctccggcacc
gtcattacgttccccggcttccttgccgcctacgaagagggcaaggacgaaagccgcggc
gacgacgaatccgatgaagcccgccgcctgccgaacgttgccaaggacgattccctgact
gcttcggacatcgttgctgttggccacgaaacgtccccgcccccgcggtacacggaagcg
tccctcaccgcagagctggaaaagcgcggcatcggccgcccatccacgtatgcgtccacg
atttccaccatccaggaccgcggatacgtccggaaacagggctctgccctggttcccagc
tggattgccttctcggtgatccggttgctggagcagcacttcacggactacgtggactac
gagttcacggccgacatggaaggcgacctggacaagatcgccaacggccaggcagcgggt
accgcctggctcaagcacttctactacggtgaagacgccgatcccggcctgctgagcatc
gtcaacaacctgggcgaaattgatgcgcgggaaatcaactcggtgccgatcgccgaaggc
atcacactgcgcgttggcaagttcggaccctacctggagagctccatccccacggtggat
gagaagacgggcgaggtagttgagtctgcccgtgccaatgtccctgaggaactcgctccc
gacgagctcacggccgaaaaagccaaagagctcatggagacagccgctcccgaggaacgc
gttctgggaaccgacccgcacaccggtcacacggttgtggcaaagaatggtcgctacggt
gcctacgtcaccgagatcatcccggaaatgaccgaggaacagttggccaaccaaccggtc
gagtattacaagaacggcaagcccaagcctccgaagaagccggtcaaggcaaagccgcgc
accggttcgctcttcaaatccatgacggtggacagcgtgaccctggatgaagcgctgcag
ctcatgagccttccgagggtcctgggtgaggacgccgaaggcaaccccattacagtccag
aacggccgttttggtccgtacttgaagaagggcacggactcgcggtccatcggatccgaa
gaggaaatcttcacgatcactctggaccaggcgttggagatctactcgcagcccaaacaa
cgtggagcgcgggcagccgtcccgcccttggccgagttcggccctgacccagtgtcggag
aagaacatcgtcgtgaaggaaggccgcttcgggccctacatcacggacggcgtcacgaac
attactgtcccgcgctcaacctcgcttgaggaactgacccgggaacgcgccgtcgagctc
ttggctgaaaagcgggccaagggaccggtcaagcggaccaccacacgtaaggccccggcg
aagaaagccgcggcgaggaagtag
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