Pseudomonas azerbaijanorientalis: KSS91_09245
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Entry
KSS91_09245 CDS
T07706
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paze
Pseudomonas azerbaijanorientalis
Pathway
paze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSS91_09245 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paze03400
]
KSS91_09245 (mfd)
Enzymes [BR:
paze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS91_09245 (mfd)
DNA repair and recombination proteins [BR:
paze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSS91_09245 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXH63651
LinkDB
All DBs
Position
complement(2133003..2136452)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRARLEATGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGGGRERFPARELPNL
AIEAKATQPLAALADFLDQFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQTAEFLALEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLIRITALKLQAEQLGIKKV
DGGPQGGRVEFAAQTPVDPLTLIKLIQSQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLVPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggccgccagcgctgccaagcgcttt
accctgctgctgaccgccgacagccaaagtgccgaacggctggaacaggagctgggtttc
ttcgccccggatttgcccgtactgcactttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtaccggttgccggag
ctgagtcatggcgtactggtggtgccgatcacgaccgccctgcatcgcctggcaccgacc
aaattcctgctcggcagcagcctggtgctggacatcggccagaaactcgacgtcgagcaa
atgcgcgcccggcttgaagccacgggttatcgctacgtcgatacggtgtatgaacacggc
gagttcaccgttcgcggctcgctgatcgatctgttcccgatgggcagcaagttgccgtat
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggagaaccag
cgttcgatcgacaaagtcgactcggtcaagctgttgccggccagggagttcccgctgcag
aaagaagcggtcacccgtttcaaggcgcgcttccgtgagcgttttgacgtcgacttccgc
cgttgcccgattttccaggatttgagcagcgggattaccccggccggcatcgagtactac
ctgccgctgttcttcgaggaaacctcgacgctgttcgattacctgccccaggacacgcaa
gtgttttccctgccgggcatcgagcaagccgcggaaaacttctggaacgacgtgcgcaat
cgctatgaagaacgccgtgtcgacccgtcccgtcctttattgccgcctgccgaactgttc
ctgccggtggaagactgcttcgcacgcctgaagaactggccgcgcgtggtggccagtcaa
caggatgtggaaagtggtggcggtcgcgagcgcttcccggctcgcgagttgccgaacctg
gccatcgaagccaaggctacccagccgttggcggcattggcggacttcctcgaccagttc
cccggtcgcgtgctgttcaccgcagaatccgcaggccgccgcgaggtgctgctggagctg
ctggagcgtctgaagctgcgaccgaaaaccgtcgacagctggccggacttcgtcgctggc
aaagaccgcctggcgatcaccatcgcgccgctggatgaaggcctggtgctggacgaccca
gccctggccctggtcgccgaaagcccgttgttcggccagcgcgtgatgcagcgccgtcgc
cgcgaaaagcgcgccgatgccaacaacgacgccgtcatcaagaacctcaccgagctgcgc
gaaggggcgccggtggtgcacatcgaccatggtgtcggccgttacctgggcctggcaacc
ctggaaatcgacaaccagaccgccgaattccttgccctggaatatgccgaaggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgatgacgcc
ctggccccgctgcaccgcctcggttccgagacctggcagaaagccaagcgcaaagccgcc
gaacaggtgcgcgacgtggccgccgagttgctcgacatctatgcacgccgcgccgcccgt
gaaggctacgccttcgccgacccgaaagccgactacgccaccttcagcgccggtttcccg
ttcgaagaaaccccggaccagcaaaccaccatcgaagcggttcgcgaagacatgctcgcg
cccaagccaatggatcgcctggtgtgcggcgacgtcggcttcggcaagactgaagtggcg
atgcgcgccgcgttcatcgcggtgcatggcggcaagcaagtggcgatcctggtgccgact
accctgctcgcccagcagcattacaacagtttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaatgccgccgtagccgat
ctggccgaaggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgacgtg
aagatcaaaaacctgggcctggtgatcatcgacgaggaacaccgtttcggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctcaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacc
ccgccggcccgccgcctgtcggtacgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggccttgctgcgtgagctgctgcgtggcggccaggtctattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgagctggtaccggaagcacggatc
ggcatcggtcacgggcagatgcgcgaacgcgaactcgagcaggtaatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtaccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagttgcaccag
ctgcgcggccgggtcggacgcagtcaccaccaggcctacgcctacctgctgacgccaccg
cgccagcaaatcacgccggacgcggaaaagcgcctggaagcgatcgccaacacccaggac
ctcggcgcgggcttcgtgctcgccaccaacgacctggaaatccgtggtgccggcgaactg
ctcggtgacggtcagagcgggcagatccaggcggtcggctttacgctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgagcagccgaacctcgatcaaccgctc
ggcggtgggcctgaagtcaacctgcgagtgccggcactgattccggaagactacctgccg
gatgtccacgcccgcctgattctctacaagcgcattgcctcggccaccgatgaggacggc
ctcaaggatttgcaggtggagatgatcgatcgattcggcctgttgccggaaccgaccaag
aacctgatccgcatcactgcattgaagttgcaggccgagcaactgggcatcaagaaagtc
gacggcggcccgcaaggcggacgcgtcgagttcgctgcgcagacgccggtcgacccgctg
accctgatcaagctgatccagagccagccaaaacgctataaattcgaaggggccacgatg
ttcaagttcatggttccgatggagcgcccggaagagcgctttaatactgtagaggcgctg
ttcgagcgcctcgttccgaaaactgcttga
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