Pseudomonas azerbaijanorientalis: KSS91_25180
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Entry
KSS91_25180 CDS
T07706
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paze
Pseudomonas azerbaijanorientalis
Pathway
paze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS91_25180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paze03019
]
KSS91_25180
Enzymes [BR:
paze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS91_25180
Messenger RNA biogenesis [BR:
paze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS91_25180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QXH61360
LinkDB
All DBs
Position
complement(5616020..5617360)
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AA seq
446 aa
AA seq
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MTFATLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLAMEGPKVTANSVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMK
LRSGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKR
QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWIVTVDKKRKPELFVHLMR
KGKWKQVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLSAIE
MLTRQTLKRQNEPDFEPEHRVPDTDASGQVVKKPKKPKKPKASGGGGGKRNLGKWVDSGE
VAPAEPSTKPVRKVPVFNTGPRKRKP
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgccacccttggcctgatcgaacccttgctgcgctcacttgagacgctcggc
taccagactccgacgccggttcaggcgcaagccattccggcggtgctggccggtcgcgac
ctgatggccgccgctcagaccggcaccggcaagaccgccggtttcgccttgccgctgctg
caactgctggccatggaagggccgaaagtcaccgccaactcggtccgcgcgctgatcctg
gtaccgacccgcgagctggccgagcaggttcacgaggccgtgcgccagtacgccgaaaat
ctgccattgcgcacctacgcggtgtacggcggcgtcagcatcaacccgcaaatgatgaag
ctgcgcagcggtgtcgacctgctggtggcaaccccgggccgcttgctcgacctgttccgc
cagaacgcgctgaagttcaaccagctgcaaaccctggtgctggacgaagccgaccgcatg
ctcgacttgggcttttccgaggagctggcgaacatttaccgcgcgctgccgaagaaacgt
cagacgctgctgttctccgcgaccttctccgatgacatccgcctgctggccggacagatg
ctcaacgacccgctgagcatcgaagtcagcccgcgcaacgtggcggccaatacggtcaag
caatggatcgtgacggtggacaagaagcgcaagccggaactgttcgtgcacctgatgcgc
aagggcaagtggaagcaagtgctggtgttcgccaagacccgcaacggcgtggacgcgctg
gtggaaaaacttcaggggctgggcatcaacgccgacggcatccacggcgacaaaccccag
gcgacccgccagcgcgcgctggatcgtttcaaggcaagtgaagtgcagattctggtcgct
accgacgtggccgcccgtggcctggacatcgaagacctgccgctggtggtcaacttcgac
ttgccgatcgtcgccgaggattacatccaccgcatcggtcgtaccggccgcgcggggtcg
acgggcgaggcgatttccctggtgtgcgccgatgaagtgaatctgctgtcggccatcgag
atgctgacccgccagaccttgaagcggcagaacgagccggacttcgagccggagcaccgc
gtaccggacaccgatgccagtggccaggtcgtcaagaagccgaagaaaccgaagaagccc
aaggcttccggtggtggcggtggtaaacgcaatcttggcaagtgggtggatagcggagag
gttgcaccggcggagccttcgaccaagccggtgcgcaaagtgccggtgttcaataccggg
ccgcgtaagcgtaagccttaa
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