Pseudomonas azerbaijanorientalis: KSS91_25970
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Entry
KSS91_25970 CDS
T07706
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paze
Pseudomonas azerbaijanorientalis
Pathway
paze03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paze00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSS91_25970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paze03021
]
KSS91_25970 (rpoC)
03400 DNA repair and recombination proteins [BR:
paze03400
]
KSS91_25970 (rpoC)
Enzymes [BR:
paze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSS91_25970 (rpoC)
Transcription machinery [BR:
paze03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSS91_25970 (rpoC)
DNA repair and recombination proteins [BR:
paze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSS91_25970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QXH61513
LinkDB
All DBs
Position
complement(5773861..5778060)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLATEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacgggctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggcaaaagttcgtcgtgag
cgcatggcgcacattgaactggcctcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctacgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagaattcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggagcacgagattggccgc
ctgcgtgaagaaattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctcgatggcggtcgtttc
gcgacttctgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgctggatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagccgtcgacgcattgctcgacaacggtcgtcgtggccgcgctatcacaggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctcgcgaccaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccggaagtttgggacgttctcgctgaagtgattcgcgaacacccg
gttcttctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgcgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacgcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtattcgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactccacgccaaggttaaagtccggatcaacgaaaccgtcaacgaccgtgac
ggcggcagcgtgaccaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgttc
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgcagccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggcgtcgaagtcgaccaggagtcgttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgcagcacagattcgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgaaacgccgattact
gcgaacttccgtgagggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaacggcgaactcgggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgattgcggcaccgagcacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgttgggtgagcgcgtattg
ggtcgtgttattgcccgtgacgtattcaagccgggtaccgaggacgtcatcgttcctgct
ggcaccctggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggcatttgcgccaagtgctacggt
cgtgacctggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgaaccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcaagccggacctctgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cataacctgaagcacgttgagcgagtggacggtcacctggttgccgtgtcccgttccggt
gagctggccatcgctgatgacttcggtcgtgagcgtgagcgttataagctgccgtacggt
gccgtgatttcggttaaagaaggtgacaaggtcgacgctggcgccatcgtggccaagtgg
gatccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaggatcgtccagctgccggtaaggacatccgtccagccgtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggacggtgcgaagattgcgatcggtgatgtt
atcgctcgtattccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcccgtcgtccgaaagaagcgtcgattcttgctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgagcgcctggcgactgaagacaagtttgtctcc
aagttcactcgtgtactgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaggcggcggtaaccggcaag
cgcgattacctgcgcggccttaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgtaagcgtcgccgtgatgcagacaaaccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcgagcggtaactga
DBGET
integrated database retrieval system
