Pseudomonas azerbaijanorientalis: KSS91_26320
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Entry
KSS91_26320 CDS
T07706
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paze
Pseudomonas azerbaijanorientalis
Pathway
paze02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paze00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KSS91_26320 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paze03021
]
KSS91_26320 (rpoD)
Transcription machinery [BR:
paze03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KSS91_26320 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QXH61574
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Position
5849077..5850924
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AA seq
615 aa
AA seq
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MSGKAQQQSRIKELITLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEV
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPIDAKAVKADDDTDDEDGEASDDEEEAESGPDPIIAAQRFGAVADQMEITRKALKKH
GRHNKAAIAELLALADLFMPIKLVPKQFEALVERVRSALDRLRQQERAIMQLCVRDARMP
RADFLRQFPGNEVDESWSDALAKGKSKYAEAIGRLQPDIVRCQQKLTALETETGLTIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacacttggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaatgacatggggatcaacgtattcgaggtt
gcgccagataaggattcccttatgctggccgacgccgataccgacgaagccgcagccgaa
gaggccgctgcagcgttggctgcggtcgagaccgacattggtcgcactaccgacccggtg
cgcatgtacatgcgcgaaatgggtacggtggagctcctcacacgtgaaggcgaaattgaa
atcgccaagcgtattgaggagggcatccgtgaggtgatgagcgcaatcgcgcacttccct
ggcacggttgatcatattctctccgagtacacccgcgtcaccaccgaaggtggccgcctg
tccgacgtcctgagcggttatatcgacccggacgacggcatcgcgccgcctgcggcagaa
gtgccgccaccgattgacgcgaaagccgtcaaggcggatgacgacaccgacgacgaagac
ggtgaagcctcggatgacgaggaagaagccgaaagcggtccggatccgatcatcgccgcc
cagcgttttggcgctgtggccgatcagatggaaatcacccgcaaggcgctgaaaaagcac
ggtcgtcacaacaaggcagcgattgccgagttgctggccctggccgacctgttcatgccg
atcaaactggtaccgaagcaattcgaagccctggtcgagcgtgttcgcagtgccctggat
cgcctgcgtcagcaagagcgtgcaatcatgcagctctgcgttcgtgatgcgcgcatgccg
cgtgcagacttcctgcgccagttcccgggcaacgaagtcgacgaaagctggagtgacgcc
ctggccaaaggcaaaagcaaatacgctgaagccattggccgcctgcagccggacatcgtc
cgttgccagcagaagctgaccgcgctggaaaccgaaaccggtttgaccatcgccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagag
atggttgaagccaacttgcgtctggtgatctcgatcgccaagaagtacaccaaccgtggc
ctgcaattcctcgatctgatccaggaaggcaacatcggcttgatgaaagcggtagacaag
ttcgaataccgccgcggctacaagttctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgcatttcccggcagatgctgcaggaaatgggtcgcgaaccg
accccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggtattg
aagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagattcccat
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgttgcaaccgttgag
agccttaaagaagcgactcgcgaagtgctgtccggcctcactgcccgtgaagccaaggta
ctgcgcatgcgcttcggtatcgacatgaataccgaccacaccctcgaagaggttggtaaa
cagtttgacgtgacccgcgagcggattcgtcagatcgaagccaaggcgttgcgcaagctg
cgccacccgacgagaagcgagcatctgcgctccttcctcgacgagtga
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