Pseudomonas azerbaijanorientalis: KSS91_26950
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Entry
KSS91_26950 CDS
T07706
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paze
Pseudomonas azerbaijanorientalis
Pathway
paze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS91_26950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paze03019
]
KSS91_26950
Enzymes [BR:
paze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS91_26950
Messenger RNA biogenesis [BR:
paze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS91_26950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QXH61692
LinkDB
All DBs
Position
5999589..6001451
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AA seq
620 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDMRNPRNPRGPRGDGPNGSGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPAREQRPSQPPRAAADRAPDEFLDDDIDN
FGNRVDYVPQQKPAQGRGRRPGAPAQGTAAGTPRSGKPQGRQNGPRNSDGASTGTPPAKR
NGPRSGAPRDGQARREDSRNRRPARDDQPRSEPAVQNPRGPAPKIMHKESKADRFPTPEQ
LDQLPSRPRGEKPALLTRNR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcacagacaggtactggtaaaaccggtggtttcgcccttccgatcctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtgctggtcctgaccccgactcgcgaactcgccgcgcaagtgcatgaaagcttcaag
atctatgcccgtgacctgaagttcgtcagcgcctgcatcttcggtggtgtcggcatgaac
ccgcaggttcaggccatgtcccgtggcgtagacgtactggtggcctgccctggccgcctg
ctcgacctggccggccaaggcagcgtcgatctgtcccacgtggaaatcctcgtgctggac
gaggccgaccgcatgctcgacatgggtttcgtccatgacgtgaaaaaggtcctggcccgc
ctgccggccaaacgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtattccgtctgccggccagccacaagcgtgccttgctg
gcgcacctgatcaccgctggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaaacacggcctgagcgctgtcgcgatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggcaccgtg
cgcatcctggtggccaccgacatcgccgcccgcggcctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaatgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaggcgatttcgctggtcgccccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaaacagaaaatcgccgacggcgacctgatgggcttc
gatgcaagcaccatcgaggcggaaaagcctgaagtgcgcgagcgtccggacatgcgtaac
ccgcgcaatccgcgtggcccgcgcggcgacggcccgaacggcagcggtggtggcggcggt
cgcaaggacaaaggcaaggacaagggcaaggaaaaaccggccggcgaacgcggcgagcgc
cctgcccgtcagcagaagccacgtgaaggcactccggctcgcgaacagcgtccgagccaa
ccgccacgtgccgccgctgaccgtgccccggacgagttcctggacgacgatatcgataac
ttcggtaaccgcgtcgactacgtaccgcagcagaaacccgcgcaaggtcgtggtcgtcgt
ccgggtgctccggcacaaggcaccgccgcaggcactccacgttccggcaagccacaaggt
cgccagaatggtccgcgcaatagcgatggcgccagcaccggcaccccgccggccaagcgt
aacgggcctcgcagtggcgcaccgcgcgatggccaggcccgccgcgaagactcacgcaat
cgccgcccggcccgtgacgaccagcctcgttcggaaccggctgtgcagaacccgcgcggc
ccggcaccaaagatcatgcacaaggaatcgaaagccgaccgcttcccgacacctgagcag
ctggatcaactgccaagccgtcctcgtggtgaaaaaccagcgctgctgacccgcaatcgc
tga
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