Pseudomonas azotoformans: AYR47_03785
Help
Entry
AYR47_03785 CDS
T04879
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pazo
Pseudomonas azotoformans
Pathway
pazo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pazo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYR47_03785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pazo03021
]
AYR47_03785
03400 DNA repair and recombination proteins [BR:
pazo03400
]
AYR47_03785
Enzymes [BR:
pazo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYR47_03785
Transcription machinery [BR:
pazo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYR47_03785
DNA repair and recombination proteins [BR:
pazo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYR47_03785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AMN77504
UniProt:
A0A127HSD5
LinkDB
All DBs
Position
complement(793222..797421)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVSGTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIAAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcactggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgtgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccactcttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggaacacgagattggccgt
ctgcgtgaagagattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccaaggttccggtaacttgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccgctggtaccgttggacggtggtcgtttc
gcgacgtccgacctcaacgacctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaagctgtcgatgccctgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aagcgccctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggcacttgagctattcaagccattc
atcttcggcaagctggaaatgcgcggtctcgcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgccagaggtttgggacgttctcgctgaagtgatccgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgcgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aagggcgaaggtcgtgtattcgctgacctgcaagaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaagtgcggatcaacgaaaccgtcaacgaccgtgat
ggcggcagcgtgagcggcacccgtatcgtcgacactactgtcggccgtgcgctgctgtat
caagttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctattcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagctcgcatcatcgcggctgcaaccgatgaa
gtgaaagagatcgaaagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctttggtcgaaggcaaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcacggcgacgaagttgaccaagagtccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgaaacgccgattacc
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtcttgcggataccgcgttgaaaaccgctaactccggttacctgacgcgtcgtctg
gtagacgttgcacaagatctggttgtaaccgagatcgattgcggcaccgagcacggcctg
ctgatgacgccgcacattgaaggcggtgacgttgtagagccactgggtgagcgcgtattg
ggtcgtgttattgcccgtgacgtattcaagccaggcaccgaggaagttatcgttcctgcc
ggcaccctggtagatgagaagtgggtcgagttcatcgaactcaacagcatcgacgaagtg
atcgttcgctcgccgatcagctgcgaaacccgctacggcatttgtgccaagtgctacggc
cgtgacttggctcgtggtcatcaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccattggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggcggtactgtccgtctg
cacaacctgaaacacgttgagcgagtggatggccacctggttgctgtgtcccgttccggt
gagctggcaatcgctgatgactacggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagatcgtccagctgccggtaaagacatccgtcctgccgtgaagatg
gtcgatgacaacggcaaggacttgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggatggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtaccgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgcctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ttgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgagcgtctgggcgcggaagacaagtttgtctcc
aagttcacccgcgtgctgctgggtatcaccaaggcgtcgttgtccactgagtcgttcatc
tcggcggcctccttccaggagaccactcgtgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggttgtgggtcgtttgatcccagccggt
accggtttggcttaccacagcgagcgtaagcgtcgccgtgatgctgacaagccgctgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactctagcggtaactga
DBGET
integrated database retrieval system
