Pseudomonas azotoformans: AYR47_08425
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Entry
AYR47_08425 CDS
T04879
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pazo
Pseudomonas azotoformans
Pathway
pazo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR47_08425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazo03019
]
AYR47_08425
03400 DNA repair and recombination proteins [BR:
pazo03400
]
AYR47_08425
Enzymes [BR:
pazo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYR47_08425
Messenger RNA biogenesis [BR:
pazo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYR47_08425
DNA repair and recombination proteins [BR:
pazo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYR47_08425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AMN78347
UniProt:
A0A127HVB9
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All DBs
Position
1804473..1806410
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AA seq
645 aa
AA seq
DB search
MHDTLQQVFGYPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSREDANDVMARARSGELKILMISVERLKNERFR
NFLQSVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIAPDDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMGERADQPSIVYVTLQKTAE
QIAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRRVLDELQ
AARGDGQWEFLLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLIEPEAL
LARFTGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKALDYFQEQGLIELE
SKQMTEVYSLLDTEFDPDVMSKELYTGFKQHEVGEVARIHAMLDLFATEHCLGQRLAQYF
GDENAPQRCGHCSVCHGHVAHLPPPPGLPPLVDKNFMGLCGDFIHRHHEHTGHLPGAERL
TRFLGGISVPLFTKLKARGIPGFAALEDYPYAEVREWAQAHLNDL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctccagcaggtttttggttatccacagtttcgcctgggtcaggaagag
acggtcagcgccgtgctggccggccgttcggcagcggctatttttccaacggggtcgggc
aagtccctgtgttatcagctgtcggcggtgctgctgccgcacctgacgctggtggtgtca
ccgctgttggcgctgatgcaggaccaactgggtttcttgcagcgccacggtatttcggcg
ggcagtatcgattcggcccagagccgcgaggacgccaatgacgtgatggcccgcgcgcgt
tccggcgagttgaagatcctgatgatttctgttgagcgcctgaagaacgagcgctttcgt
aacttcctgcaaagcgtgcagatctcgctgttggtggtggacgaggcgcactgtatttcc
gagtggggccacaacttccgtccggactatttgaagctgccggactaccagcgtcagttc
aatatcccacaagcgctgctgttgacggctacagcgacgcccaaggtgattgccgacatg
caggcgaagttcgccattgcaccggacgatgtggtcaccacgggcttttaccggcccaat
ctcaacctgttggtggagccggtcagcggtgcggacaagcgtcgacggttggtgcaatgg
atgggcgagcgtgccgatcagccgagcatcgtctacgtcaccctgcagaaaaccgccgag
cagattgccgagcatttgaaccgcaacggcatccaggccgaggcctatcacgccggtttg
cctcacgataaacgcgagggtatccagcagcgtttcatgggcgggcgctccaattgcatc
gtcgccaccatcgcgtttggcatgggcatcgacaaaagtgatatccgcaatgtggtgcac
ttcgacctgcccaagtccatcgagaactacagccaggaaatcggccgcgcggggcgtgat
gggcaaccgtccgattgcctggtattggccaaccgcgacagcctcaatgtgctggaaaac
ttcgtgtacggcgatacaccggagcaggagggcattcgccgggtgctcgacgagttgcag
gccgcgcgaggcgatgggcagtgggagtttttgctcaggtctttgtcggaccacagcaac
atccgcgagctgccgttgaagacgctgctggtgcagttggagctcaagggcgtgattgcg
ccgcgttatgcgttttatgccgagtaccgtttcaagtacctgatcgaacccgaggctttg
ctcgcgcgttttacgggtgagcggcagcagtttgtcgcggcgatcatccaggtgtgcaag
cgggccaagacttgggcgacggtggatttcgacgcgctttatcaacagcacaatgccgag
cgtagccgggtggtgaaagcgctggactacttccaggagcaaggcctgatcgagcttgag
agcaagcagatgaccgaggtctacagcttgcttgataccgagtttgaccctgatgtcatg
agcaaagagttatacacaggcttcaagcagcatgaggtaggtgaggtcgcacggattcac
gccatgctcgatctgttcgccaccgaacactgcctgggtcaacgcctggcgcagtatttc
ggcgatgaaaacgcgccccagcgttgcgggcattgctcggtgtgccacggccatgttgcg
caccttccgccgccgccaggtttgccgccgcttgtggataaaaacttcatggggctgtgc
ggtgattttatccacaggcatcatgaacacaccggccacttgcctggggcggaacgcctg
acgcgtttccttggcggcatcagcgtgccgttgtttaccaagttgaaagcacggggcatt
ccgggttttgctgcgttggaggattatccgtacgccgaggtccgcgagtgggcccaggcc
catctgaatgacctgtaa
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