Pseudomonas azotoformans: AYR47_15810
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Entry
AYR47_15810 CDS
T04879
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pazo
Pseudomonas azotoformans
Pathway
pazo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR47_15810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazo03019
]
AYR47_15810
03009 Ribosome biogenesis [BR:
pazo03009
]
AYR47_15810
Enzymes [BR:
pazo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYR47_15810
Messenger RNA biogenesis [BR:
pazo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYR47_15810
Ribosome biogenesis [BR:
pazo03009
]
Prokaryotic type
rRNA helicases
AYR47_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AMN79704
UniProt:
A0A127HYS0
LinkDB
All DBs
Position
3391869..3393542
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattctcgctgcc
gtcatcgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggcaaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccaggcgttaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggtcgtctgtgcgaccacctg
cgtcgtgacgaaaaagtactgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccaccgacc
cgtcagaccgtactgttctcggccaccctgccacagtcgatccgtgccattgccgagcgt
cacctgcgtgacccagagcacgtcaagatccagaccaagactcagaccgttaccgcgatc
gagcaggctcacctgttggttcacgctgaccagaagacctcggctgtactgagcctgctg
gaagtcgaagacttcgacgcgctgatcatgttcgtgcgcaccaagcaagccaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgtagctgctcgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gaacgtgttactggtcaaaaagttgccgaagtccgcctgccggatgcccaggccgttctg
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgctgaatcg
acccacggcgacctgttggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcggccctgctgcgtaaagccaccaacggtcaagccctgaccctggcagccatcgag
aaagaacgcccactggttccgaacaacgcgccacgcggtgatcgtccagagcgtactggc
gaccgtccagaccgtggtgatcgtgagcgtcgcgctccggtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcattcaggtccgtgac
agcttctccctggtggaactgccggaagacggcctggaaaaactgctggccaagctgaaa
gacactcgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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