Pseudomonas azotoformans: AYR47_29040
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Entry
AYR47_29040 CDS
T04879
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pazo
Pseudomonas azotoformans
Pathway
pazo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR47_29040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazo03019
]
AYR47_29040
03400 DNA repair and recombination proteins [BR:
pazo03400
]
AYR47_29040
Enzymes [BR:
pazo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYR47_29040
Messenger RNA biogenesis [BR:
pazo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYR47_29040
DNA repair and recombination proteins [BR:
pazo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYR47_29040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
GerE
Motif
Other DBs
NCBI-ProteinID:
AMN82107
UniProt:
A0A127I5W8
LinkDB
All DBs
Position
complement(6322995..6325121)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIE
GYGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKTSTSQASQLVRGEEREQWEALRTLRR
KLAQEHSVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEVLGGQAE
APKEVADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVAEIAPLFTGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggcacaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccaatggcggtgacgcactggtcctgatgcct
actggcggtggtaaatcgttgtgcttccaggtgccggcgctgttgcgcaatggcctggcc
gtggtggtgtcgccgctgatcgccctgatggacgaccaggtggccacccttgaagaactc
ggcgtcgccgccgcgtcgttgaactccaccctcagtgccgagcagcagcgcgacctggcg
gcacggatcaagcgcggtgaagtgaagatgctgtacctggcccccgagcgtctggtgcag
ccgcgcatgctggcttttttgcaaagcctggaaatcgccctgtttgccatcgacgaagcc
cactgcgtctcccaatggggtcatgacttccgtcgcgagtatttgcagctcggccaattg
gcagagctgtttcccgatgtgccgcgcattgccctgaccgccacggccgacaagcgcacc
cgcgaagaaatcgtcgagcgcctgcacctgcagaacgccgagcgcttcctgtcgagcttt
gaccgtccgaacattttctaccgcatcgtgcccaaggagcagccgcgcaaacagctgctg
gcgttcctttccgagcggcgcagcgatgcgggcatcgtctattgcctgtcgcgcaagaag
gtcgatgaggtggccgcgtttctctgtgaacaaggctacccggcgctgccgtatcacgcc
ggcctgcccaacgaaacacggtcagctcaccagaagcgcttcctcaacgaggaaggcctg
atcatggtggctacaatcgcgttcggcatgggcatcgacaaatccaacgtgcgcttcgtt
gcgcacatggacctgcccaaatccctcgaggcctactaccaggaaacagggcgcgccggc
cgtgacggtttgccggcggatgcgtggatggtctacggcctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgagggcgacgagcgccacaagcgcctggaacagcacaaa
ctcgacgccatgctctcgctgtgtgaagagacccgctgccgtcgccagaccttgctggcc
tatttcgatgaagacatgcccgagccgtgcggccattgcgacaactgcgtcgacggcgtg
cagacctgggacgccactgagccggcgcgccagggtttgtccgccatctatcgcaccggc
cagcgttatggcgtcggtcacttggtggatgtgttgctgggcaaggacaacgagaaggtg
cgcagcttcggccatgaaaagctctcggtctatggtgtcggcaaggcccgcgccgaaggc
gagtggcgctcgctgttccggcagatggtggcgcgcggcctggtggacatcgacatcgaa
ggctatggcggcctgcgcctgaatgacagctgccggccgttgctcaagggcgaagtcagt
ctggagctgcgccgtgacctcaagccgcagaccaccgccaagaccagcaccagccaggcc
agccagcttgtacgtggcgaagaacgcgagcagtgggaagccttgcgcaccctgcgccgc
aaactggcgcaggaacacagcgtgccgccgtacgttattttccccgactccaccctgctg
gagatgctgcgcgagcaacccaccagcatggccgagatggcgcgggtcagtggtgtgggc
gcgcgcaagctggagcgttacggccaggccttccttgaggtactcggcggccaggccgaa
gcgcccaaggaagtcgccgatatccgccacgaactgatcagcctggcacgcgccggcatg
actccgatccagatcgccggccagttgcaatgctctgaaaagaacgtctacaccttgctc
gctgaatccatcggcaagcagcagttatcgttggagcaagcccttgatttacccgaggat
ctgctcggcgaaatccaggatgcattcctggacggagagggcgaattgccacctgtggct
gagattgccccgctgttcaccgggcgcgttcctgaaggtgttttgtactgcgtacgggcg
gctttgcagtctgaattcgaaatttag
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