Pseudomonas azotoformans: AYR47_30370
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Entry
AYR47_30370 CDS
T04879
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pazo
Pseudomonas azotoformans
Pathway
pazo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR47_30370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazo03019
]
AYR47_30370
03009 Ribosome biogenesis [BR:
pazo03009
]
AYR47_30370
Enzymes [BR:
pazo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AYR47_30370
Messenger RNA biogenesis [BR:
pazo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYR47_30370
Ribosome biogenesis [BR:
pazo03009
]
Prokaryotic type
rRNA processing factors
AYR47_30370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AMN82346
UniProt:
A0A127I664
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All DBs
Position
6601288..6604476
Genome browser
AA seq
1062 aa
AA seq
DB search
MCAERRFRQPGNRRYNMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIVILPNDHLETPHFEVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQE
AAVKTAPARANAPVPAEVAAPVAAQAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKP
ASERPARNEERRNGRQQSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPTVE
RAPREERAPRTPRAPREDRKPRGEREERVRELREPLDAAPAAVAGAAAATEERPARQPRE
ERAPREERQPRAPREERQPRAEQAAAASEEEVLTGEEQLQEDGQEGAEGDRPRRRSRGQR
RRSNRRERQRDANGNVIEGSEETGENAEAATGEPTGAELAAGLAVTAAVASSVISAPAEA
QAHEQAERATAAVEETVVVEAPAAEAPVVEAPVVEAPAVEAPVVETPVVEATTPIEAPAV
PEVEVAQAPEAQPEVEVAVVEPEPVVEAIVEAPVVEAAPEVREVREEQTAFQWTAEPAAP
VEAPEPAPVVEEAPAPVAEVVVTEPAPVVEPAPVVEPAPVVEAPVVAEVAAPVVEAAPVS
ALTENGRAPNDPREVRRRRKEAEAAAAAAAAREAEHESKPLA
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtacaacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagatggccaacgcctc
tacgacctggacatcgaatccggtgcacgcgagcaaaagaaggccaacatctataaaggc
cgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgagcgc
cacggcttcctgcccctcaaggaaatctcccgcgaatacttcaagaaagcccctgaaggc
cgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtccaggtcgaaaaa
gaagaacgtggcaacaagggcgcagccctgaccacgttcatcagcctggctggccgttac
ctggtcctgatgccgaacaacccacgtgccggcggcatttcccgtcgcatcgaaggcgaa
gagcgcaacgaactgcgcgaagcgctgaacggcctgatcgcaccggccgacatgggcctg
atcgttcgcactgcaggcctgggccgcagcagcgaagaaatgcagtgggacctcgactac
ctgctgcagctgtggaccgctatcaaagaagcgtccctggatcgttccgcgccgttcctg
atctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggacatc
ggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcattcgccag
gtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttcaac
cgtttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtcgaactgccttcc
ggtggctccatcgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcggca
cgtgcgaccaaaggcagcgacatcgaagaaaccgccctgcagaccaacctggaagcggct
gaagaaatcgcccgccagctgcgcctgcgtgatatcggcggcctgatcgtgatcgacttc
atcgacatgacccctgccaagaaccagcgcgccgtggaagaaaaagtccgcgaatgcctg
gaagctgaccgtgcccgcgtacaggtcggtcgcatctcgcgcttcggcctgctggaaatg
tcccgtcagcgcctgcgtccatccctgggcgagagcagcggcatcgtctgcccgcgttgc
aacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatcctgcgcctgatc
gaagaagaagccctgaaagaccgcaccgccgaagtccgcgcgcaagtgccgatcccggtt
gcagccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacccgt
gcccgtatcgtcatcctgccgaacgatcacctcgaaaccccgcacttcgaagtgcaacgc
ctgcgtgacgacagcccggaagcccacagcggccagtccagctacgaaatcgccgctgcc
gctgccgaagtggaagaagtccagccagccgccgcgacccgcaccctggttcgccaggaa
gctgcagtcaagaccgctccagctcgcgccaatgcaccggttccagctgaagttgcagca
ccagttgccgcgcaggccgccctgcctgagccaagcctgttcaaaggcctggtgaagtcg
ctggtcagcctgttcgccaccaaggaagagccagtggctccggtcgtggttgagaaaccg
gcctccgagcgccctgcgcgcaacgaagagcgtcgcaacggtcgccaacagagccgtaac
cgcaacggtcgccgtgacgaagagcgcaagccgcgcgaagaacgtgcaccgcgtgaagaa
cgcgctccacgtgaagagcgtgcccctcgcgaagcccgtgaagaaaccccgaccgtagaa
cgtgcaccacgcgaagagcgcgcaccacgtactccgcgtgccccacgtgaagaccgcaag
ccacgtggcgagcgtgaagaacgtgtgcgtgaactgcgtgagccgctggacgcagcccct
gctgccgtagccggtgccgccgctgctaccgaagagcgcccagctcgccagccgcgtgaa
gagcgtgcgccacgtgaagagcgccaacctcgcgccccgcgtgaagagcgtcaaccgcgt
gccgaacaagccgctgccgccagcgaagaagaagtgctgaccggtgaagagcaactgcag
gaagacggtcaggaaggcgccgaaggcgatcgtccacgccgccgctcccgtggccagcgt
cgtcgcagcaaccgtcgtgagcgtcaacgtgatgccaacggcaacgtgatcgaaggctcg
gaagagaccggcgaaaacgcagaagccgcgaccggcgaaccgactggcgccgaactggct
gccggcctggccgttaccgcggctgttgccagctcggtcatcagcgctcctgctgaagcc
caggctcacgagcaggctgaacgcgctactgctgctgtcgaagaaaccgtagtggttgaa
gcacctgctgccgaggccccagtggttgaagcgccggttgttgaagcaccagcagttgaa
gcgccagttgtagagacaccggttgtcgaagccactaccccaatcgaagcaccggctgtt
ccggaagtggaagttgcccaggcacctgaagcccaaccagaagttgaagtggcggtcgtt
gagcctgagccagtggttgaagcgattgtcgaagcaccggttgtcgaagccgctccagaa
gttcgtgaagttcgtgaagaacagaccgccttccaatggactgccgagccagccgctccg
gttgaagcgccagaacctgccccagtggtagaagaagcgccggcaccggttgccgaagtc
gtggttaccgagccagccccagtggttgagcctgctccggtcgttgaacctgcgcccgtg
gttgaagcaccggtcgttgccgaagtggcagcgccagtggttgaagccgcaccggtcagc
gccctgactgaaaacggccgtgcaccgaacgacccacgtgaagtgcgtcgtcgtcgcaag
gaagctgaagccgcagcagctgctgccgcggcacgggaagcagaacacgagagcaaacct
ctcgcctga
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