Paraburkholderia sp. 22B1P: PBP221_04440
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Entry
PBP221_04440 CDS
T10680
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBP221_04440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazz03019
]
PBP221_04440
Enzymes [BR:
pazz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBP221_04440
Messenger RNA biogenesis [BR:
pazz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBP221_04440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Sacchrp_dh_NADP
DegT_DnrJ_EryC1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BEU20304
LinkDB
All DBs
Position
1:complement(506146..507678)
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AA seq
510 aa
AA seq
DB search
MSFDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLLTMPPAPGGKRVIRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALRRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK
RQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDRKREMLTHLI
KQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLV
ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI
EKLIKRAVPQEVIAGFEPDPNARPEPIVRRGQGGGGGGRQPRQGQGQGQRQAQGQQTREG
SANANNGAARGGQRASGDKPKQQAKPQGSKPAQARTDGARHQEKPRTVAHEGNARAPHAP
RKPHGSNPGALLGGGGKPRSGAPRGGQRGN
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaacagctggtccgcgcagtcaatgaactcggc
tacacatcgccgactccgatccagcagcaagccattcccgccgtcctcaacggcggcgat
ctgttggccggtgcccagacgggcacgggcaagacggccggcttcacgctgcccatcctg
caacgtcttctcaccatgccgcccgcgccgggcggcaagcgcgtcattcgcgcgctgatc
cttacgccgacccgcgaactcgccgcgcaggtcgaggaaagcgtgcgcgcgtacggcaag
tatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaacccgcaaatcgac
gcgttgcggcgcggcgtcgatatcgtcgttgcgacgcctgggcgtctgctcgatcacatg
cagcagaagaccatcgacctgtcgcatctcgagattctcgtgctcgacgaagccgaccgc
atgctcgacatgggcttcatccacgacatcaagcgcgtgctcgccaagctgccgccgaag
cgccagaacctgctgttctcggccaccttctcggacgaaatcaaggcgctcgccgacaac
ctgctcgattcgcccgcactgatcgaagtcgcacgccgcaacacgacggccgaaacggtc
gcgcagaagattcaccctgtcgaccgcgatcgcaagcgcgagatgctcacgcatctgatc
aagcagcacaactggtttcaggtgctcgtgttcacgcgcacgaagcatggcgcgaaccgt
ctggccgaacagctgacgaaggacggcatcagcgcgctcgcgattcacggcaacaagagc
cagtcggcccgcacgcgcgcgctggccgagttcaagaacaacacgctgcaggtgctcgtc
gccaccgacatcgccgcgcgcggcatcgatatcgatcagttgccgcacgtggtcaacttc
gatctgccgaacgtgccggaagactacgtgcaccgtatcggccgaacgggccgcgccggc
gcgacgggcgaggcggtatcgctggtgtgcgtcgatgagcttcagttgctgaaggacatc
gagaagctgatcaagcgcgccgtgccgcaggaagtgatcgcgggcttcgagccggatccg
aatgcgcggcccgagccgatcgtgcgccgcggccagggcggcggcggtggcggccgtcaa
ccgcgccagggccaaggtcaaggtcaacggcaagctcaggggcagcaaacgcgcgaaggc
tcggccaacgcgaacaatggcgcggcgcgcggcggccaacgcgcttcgggcgacaagccg
aagcagcaagccaagccgcaaggttcgaagcccgcgcaggcgcgcaccgatggcgcacgc
catcaggagaagccgcgcactgtcgcgcacgaaggcaacgcgcgtgctccgcacgcaccg
cgcaagccgcacggcagcaatccgggtgcattgctcggtggcggcggcaagccgcgctcc
ggcgcgccgcgcggcggtcagcgcggcaactga
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