Paraburkholderia sp. 22B1P: PBP221_08840
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Entry
PBP221_08840 CDS
T10680
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBP221_08840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazz03019
]
PBP221_08840
03009 Ribosome biogenesis [BR:
pazz03009
]
PBP221_08840
Enzymes [BR:
pazz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PBP221_08840
Messenger RNA biogenesis [BR:
pazz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PBP221_08840
Ribosome biogenesis [BR:
pazz03009
]
Prokaryotic type
rRNA processing factors
PBP221_08840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BEU20744
LinkDB
All DBs
Position
1:complement(995319..998621)
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AA seq
1100 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFREGIDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMSQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSQGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEK
PAPSAPVRTPAPTAATVEVKPATGGFIGWLKGLFGVQPAAPAPAPAPVEKTAKPARGERT
ERGERTGERGGDRNRNRRNGAGGGRDAAGRGEGAATQGRQGQPAQRGERQEREPREAREP
RGGREPREGREPREAREPREARPERVERGQDRAERGETAEATRGERQERQDRVERGERRE
RGERAERGERRKQQPEAADALSQNEAQADVAAQAQANLMGGAAPIDDARDGEERRRRRRG
RRGGRRERDEEGVNVNTAADVAEAEGETAVAASAETPVRAPEHTGRHETQPQAVEAAQQQ
PAQEVKPVEVVVAAVATGAAVVSELHASAETPALAVEKAAKAEAVVPADQAPAPTHTEVA
VEEPAVVEPQAVAPVATTQAPVEAPALVETVAAAPAEVPVVVEPVIEAVAAAPAAPAVEA
QPVVEAPVATQPVAEPVVQAAAEPVAQPVAEPVADVAQAQPAAEPVVTEPAKQAAPVAAA
AEPQPVRPNGASAGRPTENLEAMLASAGLVWVNTDSDKLRVAQEAAAQAVKPARAPRERK
PLPAADTTPMQQVETAKQPQ
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaggggatcgtgacgcgcatcgagccgtcgctcgaagcctgtttcgtcaactac
ggcgaagaccgccatggttttctcccgttcaaggaagtcgcccgccagtacttccgcgaa
ggcatcgacatgcgctccgcgcgcatccaggacgccctcaaggaaggccaggaactgatc
gttcaggtcgagaaggaagaacgcggcaacaagggcgcggccctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgaccgtcaggaactgcgcgaaacgatgtcgcagctgcaattgccg
gaaggcatgagcatcatcgcgcgcactgccgggattggccgcagcgcggaagagctgcag
tgggacctgaactacctgatgcagctgtggcgcgcaatcgaagccgcgtcgcaaagcggt
tcgcaaggtcagccgatgctgatctatctcgaatcgagcctcgtgatccgcgcgattcgc
gactacttccagccggatatcggcgaaatcctcatcgacaccacggaaatccatgaccag
gcacgcgccttcatggacatcgtgatgccggacaatgtcaacaaggtgaagcggtatcac
gacgacgtgccgcttttctcgcgtttccagatcgaacaccagatcgagaccgcgtactcg
cgcacggtgccgctgccgtcgggtggcgcgatcgtgatcgaccacacggaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggccacg
cgcacgaacctcgaagccgccgacgaagtcgcgcgccagctgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcacgaccgcgcgcgtgtccagatgggcaagatctcg
cgcttcggcctgatggaactgtcgcgccagcgtctgcgtccggcactgtcggaaggcagc
cacgtcacctgcccgcgctgtaacggcacgggtcacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcaatccac
tgccaggtgcccgtcgaagtcacggccttcctgctcaacgaaaagcgctcggaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtgctggtgccgaacaagcacctcgacacg
ccgcattacaagctcgagcgtctgcgtcacgacgacgcgcgtctcgacgatccgcgcgcg
tcgtggaagatggccgaagaagccgcccgcgaactggaatccgaaacgggctacagcaag
cgcgctgaagaggtgaagccgaagcaggaagctgccgtcaagggcatcacgcccgagaag
ccggcgcctagcgcaccggtgcgcacgccggcccccaccgccgccacggtcgaagtcaag
cccgccacgggcggcttcatcggctggctgaagggtctgttcggtgtgcaaccggcggct
cccgctcccgcgcccgcacctgtcgagaaaacggcgaagcccgcgcgcggcgaacgcacc
gagcgcggtgagcgcacgggcgaacgcggcggcgatcgcaaccgcaaccgtcgcaacggc
gcaggtggtggccgcgacgcggcgggccgtggcgaaggcgcggcaacgcaaggccgtcaa
ggccagccggcgcagcgcggcgaacgtcaggaacgcgaaccgcgtgaagcacgcgaaccg
cgcggcggccgcgaaccgcgcgaaggccgtgagccacgtgaagcacgtgaaccgcgcgag
gcacgtccggagcgcgtcgaacgcggtcaggatcgtgcggaacgcggagaaaccgctgag
gcaacgcgcggcgagcgtcaggaacgccaggatcgggtggagcgtggcgagcgccgtgaa
cgtggcgaacgcgccgagcgtggtgaacgtcgcaagcagcaacccgaagcagccgacgcg
ctgagccagaacgaggctcaggccgatgtcgccgcacaggcgcaagcgaatctgatgggc
ggcgctgctcccatcgacgatgcgcgtgatggcgaagagcgtcgtcgccgccgtcgcggt
cgccgtggtggccgtcgcgagcgtgacgaggaaggcgtgaacgtgaatacggctgccgat
gtcgcggaagcggaaggtgaaacggctgtggcagcatcggcggaaacgcctgtgcgcgcg
ccggaacacacgggccgtcacgaaacgcagccgcaagcggtcgaagcggcgcaacagcag
ccggcacaggaagtgaagccggtcgaggtcgtcgtggcagccgtcgcgacgggcgccgcc
gtggtcagcgagctgcatgcatcggctgaaacgccggctctcgccgtcgaaaaggctgca
aaggcggaagccgtcgtgcctgccgaccaagcacctgcaccgacgcacacggaagtagcc
gtcgaagaaccggcagttgtcgagccgcaagccgttgcgcctgtcgccacgacccaagct
cccgttgaagcgcctgcgctggtcgaaaccgtcgcggcagcacccgccgaagtgcctgtc
gtcgtcgaacctgtgatcgaggcggtcgcagcggctccggcagcgcctgctgtagaagcg
caaccggtggtcgaagcgcccgttgcaacccagcccgtcgccgagcccgttgttcaggcc
gccgccgagcccgtggctcagccagtcgcggaacccgtcgcggatgtcgcgcaagcgcaa
cccgcagcggaaccggtcgtaacggaacccgcaaagcaagccgcgccggtcgccgcagca
gccgagccgcaacccgttcgcccgaacggtgcatcggccggccgcccgacggaaaacctc
gaagcgatgctggcaagcgccggcctcgtctgggtcaacaccgactcggacaagctgcgc
gtcgcgcaggaagctgccgcgcaggcggtgaaacccgcccgcgcaccgcgcgagcgcaag
ccgcttccggccgccgacaccacgccgatgcaacaggtcgaaacggcaaagcagccgcag
taa
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