Paraburkholderia sp. 22B1P: PBP221_20300
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Entry
PBP221_20300 CDS
T10680
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PBP221_20300 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pazz03400
]
PBP221_20300 (recB)
Enzymes [BR:
pazz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PBP221_20300 (recB)
DNA repair and recombination proteins [BR:
pazz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PBP221_20300 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AraC_binding
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BEU21890
LinkDB
All DBs
Position
1:complement(2326505..2330224)
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AA seq
1239 aa
AA seq
DB search
MSGTAWMHAPAAQELDVFACDLDGVNQIEASAGTGKTWNICALYVRLLLEKNLSADQILV
VTFTKAATAELHERIRGRLAEVQRAIETGDDGGDPFIVRLFETTLSEERGIDLEAAAKTV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFELAADFWREQIEP
VAAAHSSFAAWLVEKGAGPASLDEQLARRLKKPLAQLRWGDIGAAEGAPNDMQARFDEAC
EMWHAERDNIVRLLERAQERLSKTSHKAETVSAAISAWSDYFAQDDCHAPPPKVALKLTA
TALTKGTKKNFEPPAHAFFIAADELAAASLAAEAAQRARWLGLVQKWLDYAPHELTARKR
TRRVVSFDDLLSNLYRALASHVWLADALRTRYPAALIDEFQDTDPLQFAIFNRIFAPKGP
LFLVGDPKQAIYSFRAADLHTYLAARAQASARYTLAVNQRSTAPIVEACNRIFEANARAF
VLEGLDYQPVRAGERQRPPFIDRDGAAGGDFCVWTLPKGDAVLTKRDAQRAASEACAAEI
VRLLRGAREGSVTIGDRPLAPGNIAVLVQTHKQGSLIKRVLSAWGVGSVELAQASVFESL
DAEQIERVLAAVDTPGDLRRLRAALATDWFGLDAATLWRLEQVDDASSTSGDAAHSVDAM
SWVERFSRYRMLWHERGFAVMWRTLMRELRVAQRLVEGAEGERRLTNVNHLAELVQARAA
TQPGIAPTLRWLAAQRAESGRGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLND
GRLREPYATVLPDALEYHDDDGSAVLHYGCDDEQSDHANGQAMREQAAERARLIYVALTR
AVYRCYLVAGAYLASRSTKESARSVLNWLVAGKARDFDEWLSKPLDDDSVYQHWEALSGD
PVAIADLPAVTRRVPLESVADSGARMRARMNQRALRDTWRMASFSSLIAAGSRTDDASAP
SEEARPDHDELADVATGDTGVALFDVATAPVELAPDDILAFPRGPAAGECLHRMFELADF
SDGSTWPHAIERALHERPAPAEPELAQRLPAMMHRLLADIVSTELVPGMTLASLDPKRRL
NEMEFLFSAASLDFPALRALLAAHGFPDVALEPGALRGFVKGFIDMIVEHEGRFWVIDWK
SNHLGDTPEDYAAAPLDEAMASHAYHLQALLYVVALHRYLRLRLADYDYDRHIGGYLYLF
VRGVRPDWRHGEHVAGVHARRPDYALVVALDALMDGGAQ
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacggcatggatgcacgcgcccgccgcgcaggaactcgacgtgttcgcgtgc
gatctcgacggcgtcaatcagatcgaggcatcggcgggaacgggcaagacatggaacatt
tgcgcgctctacgtgcggctgttgctggagaagaatctgagcgccgatcagattctcgtc
gtgacatttacgaaagccgcgacggcagagctgcatgaacgcatacgggggcgtctcgcc
gaagtgcagcgcgcaatcgaaacgggcgacgatggcggcgatccgttcatcgtccggcta
ttcgagacgacgctttccgaagaacgcggcatcgacctcgaagcggccgcgaaaacggtg
cgccgtgcgttgcgcacgttcgatcaggccgccatccacacgattcacgcgttctgtcag
cgcgcgttgcaggaagcgccgtttgccgctgcgatgccgttcgcattcgagatggaagca
gacgacgcagcgttgcgcttcgaactggccgccgacttctggcgtgagcagatcgaaccc
gtcgcggcagcgcattcgtcgttcgcggcatggctggtcgagaagggcgcgggtcccgcg
tcgctcgacgaacagcttgcgcggcgcctgaagaagccgctcgcgcagttgcgctggggt
gacatcggcgcagcggaaggtgcaccgaacgatatgcaggcgcgcttcgacgaagcctgc
gagatgtggcatgccgagcgcgacaacatcgtgcgcctgctcgaacgggcacaggagcgt
ctgagcaagacttcgcacaaggctgaaacggtgagcgccgcgatcagcgcgtggagcgac
tatttcgcgcaggacgattgccacgcgccgccgccgaaagtggcgctgaaactgacggcc
actgcgctgacgaagggcacgaagaagaatttcgagccgcccgcgcatgcattcttcatt
gcagccgacgaactggccgcagcctcgctcgcggcggaagccgcgcagcgtgcgcgctgg
ctcggtctggtgcagaagtggctcgactacgcgccgcacgaactgacggcgagaaagcgc
acgcgccgcgtcgtgtcgttcgacgatctgctgtcgaacctgtatcgcgcgctcgccagt
cacgtgtggcttgcggacgcgctgcgcacgcgctatcccgcggcgctgatcgatgagttc
caggataccgacccgctgcagttcgcgatcttcaaccgtatcttcgcgccgaagggaccg
ctctttctggtcggcgatccgaagcaggcgatctacagtttccgcgcggcggatctgcat
acctatctcgccgctcgcgcacaggcgtcggcgcgttatacgctcgccgtcaatcagcgc
tcgacagcgcccatcgtcgaggcatgcaaccgtatattcgaggcgaatgcgcgggcgttc
gtgctcgaagggctcgactatcaacccgtgcgagcgggcgagcggcaacggccgccgttc
atcgaccgagacggcgcggcgggcggcgacttctgcgtttggacattgccgaagggcgac
gcggtgctgaccaagcgcgacgcgcagcgcgcggcgagcgaagcgtgcgcggcggagatc
gtgcgtctgctgcgcggcgcgcgcgagggcagcgtgacgatcggcgacaggccgctcgcg
cccggcaacatcgccgtgctcgtgcagacgcacaagcagggcagtctgatcaagcgcgtg
ttgtccgcgtggggcgtgggcagtgtcgaactggcgcaggcatccgtgttcgaatcgctc
gatgccgagcagatcgagcgtgtgctggccgccgtcgatacaccgggcgacttgcgccgc
ctgcgcgccgcgctcgcgaccgactggttcggtctcgatgccgcaacgctttggcggctc
gagcaggtcgacgatgcatcgtccacgtcgggtgacgccgcgcattccgtcgatgcgatg
agttgggtcgaacgcttctcgcgttaccgcatgctgtggcacgagcgcggcttcgccgtg
atgtggcgcacgctgatgcgtgaactgcgcgtcgcgcagcggctcgtggaaggtgcagag
ggcgagcggcggctgaccaacgtcaaccatctggccgaactcgtgcaggcgcgcgccgcg
acgcagccgggcatcgcgccgaccttgcgctggctcgccgcccagcgtgcggaaagcggg
cgtggcggcgaagaagcgcagctgcggctcgaatcggaccgcaacctcgtgcagatcgtc
accgtgcataagtccaagggcctcgaatacgccgtcgtgttctgcccgttcctcaatgat
ggccgcctgcgcgagccgtatgcgacggtcctgcctgacgcgctcgaatatcacgatgac
gacggttcggccgtgcttcactacggctgcgacgacgagcagtccgatcacgcgaacggc
caggccatgcgcgaacaggcggccgaacgcgcgcggctgatctacgtcgcgctgacgcgc
gccgtgtatcgctgttacctggtggcgggtgcatatctggcgtcgagatcgacgaaggaa
tcggcgcgtagtgtgttgaactggctcgttgcgggcaaagcgcgcgatttcgatgaatgg
ctctcgaagccgctcgatgacgactcggtctatcagcattgggaggcgctatcgggcgac
cccgtggccatcgcggatctgccagccgtgacgcgtcgcgtgccgctggaaagcgtggcc
gacagcggcgcccggatgcgggcgcggatgaaccagcgcgcgttgcgcgacacgtggcgc
atggcgagtttcagctcgctgatcgcggcgggttcgcgcaccgacgacgcatcggctccg
agcgaagaagcgcgtccggaccacgacgaactggcggatgtcgccaccggtgacacaggc
gttgctcttttcgatgtcgccacggcgcccgtcgaactcgcacccgacgatatcctcgcg
tttccgcgcggtccggcggcgggcgagtgtctgcatcgcatgttcgaactcgcggatttc
tccgacggcagcacgtggccgcacgcgatcgaacgcgcgctgcacgagcggccggcgccc
gccgagccggaactcgcacaacgtctgcccgcgatgatgcaccgtttgctcgcggatatc
gtgagtacggaactggtgcccggcatgacgctcgcctcgctcgatcccaaacgccggctc
aacgagatggagtttctgttctcggcggcatcgctggactttcccgcgttgcgcgcgctg
ctcgccgcgcacggctttcccgatgtcgcgctggaaccaggtgcgctgcgcgggttcgtc
aaaggtttcatcgacatgatcgtcgagcacgaggggcgcttctgggtgatcgactggaag
tcgaatcatctcggcgacacgcccgaggactacgccgccgcgccgctcgacgaagcgatg
gcgagccacgcctatcacctgcaggcgctgctttatgtcgtcgcgctgcatcgctatctg
cggctgaggctcgcggactatgactatgacaggcacatcggtggttatctgtatctgttc
gtgcgcggcgtgcggcccgactggcgacacggagaacacgtggccggcgtgcatgcgcgg
cggcccgattacgcgctcgtcgtggcgctcgatgcattgatggacggaggcgcgcaatga
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