Paraburkholderia sp. 22B1P: PBP221_38810
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Entry
PBP221_38810 CDS
T10680
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PBP221_38810 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pazz03021
]
PBP221_38810 (rpoD)
Transcription machinery [BR:
pazz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PBP221_38810 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Exonuc_VII_L
FtsA
MitMem_reg
Motif
Other DBs
NCBI-ProteinID:
BEU23741
LinkDB
All DBs
Position
2:complement(667210..669210)
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AA seq
666 aa
AA seq
DB search
MAKLDRDNSQFETTTASKAPKRAAKAKAQPAAAPQDAALLESLAEERQRQMRALIALGRE
RGYLTHADINDHLPDNFTETAAMETIVSTFGEMGVSVYETAPDAETLLLNDGPSAAASDD
QADEEAEVALSTVDSEFGRTTDPVRMYMREMGASELLTRAGEIEIAKRIEGGLQDMVQAI
AMCPSIISTILADVDRVVAGEIRIDELVDGISDTSEAAELDEEAAEAAAEEELEASASDE
DSDDEDGDLSDDGGEKANAARLEQLTADSLAIFQRVRDLFASVPDMPVTDKRRATAIANL
RESIQQELTPIRFTAKTIDRLCAEVQAQVAQVRAIERNILQIAVDRCDMPREAFVESFPG
NETDLDWTMRIAAKSKSYGPALERHLPAIQSEQQKLVDIEASIALPLQQLKQINKQLGSA
EGKMRQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFS
TYATWWVRQAITRAIADQARTIRVPVHMIESINKLNRIQREIVQQTGQEPHPSVLAERMD
MPEAKIRSILKIAKNPASLDSPVGEDADTTLGDMIEDTSATSPADAAVHANMRRAIDEAL
DALTPREAKVLRMRYGIDTASELTLEEVGRQFDVTRERIRQIEGKAIRKLNHPSRADKLR
PFLERS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaagcttgaccgggacaactcccagttcgaaaccaccaccgcatcgaaagcgcct
aagcgcgcagcaaaagcgaaggcgcaacccgccgccgcgccgcaagatgcggccttgctg
gaatccctcgctgaagagcgacaacgtcagatgcgcgcgttgatcgcgctcggccgcgag
cgcggctatttgacgcacgccgacatcaacgaccacttgcccgacaatttcaccgaaacg
gccgcgatggaaaccatcgtcagcacgttcggcgaaatgggcgtgtccgtgtacgaaacg
gcgcccgacgcggaaacgctgctgctgaacgacggcccgtcggctgccgcatcggacgat
caggccgatgaggaagcggaagtcgcgctgtccacggtcgactccgagttcggccgcacg
accgacccggtccgcatgtatatgcgcgaaatgggcgcgagcgagctgctcacgcgcgcc
ggcgaaatcgaaatcgccaagcgcatcgaaggcggcctgcaggacatggtgcaagccatc
gcgatgtgcccgtccatcatctcgacgatcctcgccgacgtggaccgcgtcgtcgcgggt
gaaatccgcatcgacgaactggtcgacggcatcagcgacacgagcgaagccgccgaactc
gacgaggaagcagccgaagccgctgccgaagaagagctggaagcgagcgcgtcggacgaa
gattcggacgacgaagacggcgacctgtcggacgacggcggcgaaaaagccaacgccgcg
cgcctcgagcaactgacggccgacagcctcgcgatcttccagcgcgtgcgcgacctcttc
gccagcgtgcccgacatgcccgtcacggacaagcgccgggcaacggctatcgcgaacctg
cgcgagtcgatccagcaggaactgacgccgatccgcttcacggccaagaccatcgaccgc
ctgtgcgcggaagtgcaggcgcaggtcgcgcaggttcgcgcgatcgaacgcaacatcctg
cagatcgccgtggatcgctgcgacatgccgcgcgaagcgttcgtcgagtcgttcccgggc
aacgagaccgatctcgactggaccatgcggatcgccgcgaagtcgaagtcgtacggtccg
gcgctcgagcgtcacctgcccgccatccagtcggaacagcagaagctggtcgacatcgaa
gcgtcgatcgcgctgccgctgcagcagctcaagcagatcaacaagcagctcggctcggca
gaaggcaagatgcgccaggccaagcgggagatgatcgaagcgaacctgcgtctggtcatt
tcgatcgcgaagaagtacgtgaatcgcggcatgcacttcctcgacctgatccaggaaggc
aacatcggcctgatgaaggcggtggacaagttcgaataccgtcgcggctggaagttctcg
acgtacgcaacgtggtgggtccgtcaggccatcacgcgcgcgatcgccgaccaggcgcgc
accattcgtgtgccggttcacatgatcgaatcgatcaacaagctgaaccgcatccagcgc
gagatcgtccagcagacgggtcaggagccgcatccgtccgtgctggccgagcgcatggac
atgcccgaggcgaagatccgcagcatcctgaagatcgcgaagaatccggcctcgctggat
tcaccggtgggcgaagatgccgacacgacgctcggcgacatgatcgaagacacgtccgcg
acgtcgcccgccgacgccgccgtgcacgcgaacatgcgccgcgcgatcgacgaagcgctc
gacgccctcacgccgcgtgaagcgaaggtgctgcgcatgcgctacggcatcgacacggcg
tcggaactgacgctcgaagaagtgggccgccagttcgacgtgacgcgcgagcgtatccgc
cagatcgaaggcaaggcgatccgcaagctcaatcacccgagccgtgcagacaagctgcgc
ccgttcctcgaacgcagctga
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