Paraburkholderia sp. 22B1P: PBP221_47170
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Entry
PBP221_47170 CDS
T10680
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PBP221_47170
09124 Replication and repair
03420 Nucleotide excision repair
PBP221_47170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pazz03021
]
PBP221_47170
03036 Chromosome and associated proteins [BR:
pazz03036
]
PBP221_47170
03400 DNA repair and recombination proteins [BR:
pazz03400
]
PBP221_47170
Enzymes [BR:
pazz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PBP221_47170
Transcription machinery [BR:
pazz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PBP221_47170
Chromosome and associated proteins [BR:
pazz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PBP221_47170
DNA repair and recombination proteins [BR:
pazz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PBP221_47170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
DUF7711
Motif
Other DBs
NCBI-ProteinID:
BEU24577
LinkDB
All DBs
Position
2:complement(1605785..1608052)
Genome browser
AA seq
755 aa
AA seq
DB search
MTYIVAVRTLCEFTARRGDLDLRFTPAPSALEGIAGHQAVTARRASGYEAEITLTGTHGG
LTVRGRADGYDPALNRLEEIKTHRGDLERMPANHRALHWAQALVYGHLLCEARALDELTV
ALVYFDIADQKETVLTEQHTAASLRAFFEDQCERFVAWAAREELHREARNAALNALRFPH
GEFRSGQRELSVAVFRAARDGRCLMAQAPTGIGKTLGTIFPLLKACGADHLDRVFFLTAK
TPGRALALEAVESLHRGENTLPLRTLELVARDKACEHPDNACDGESCPLARGFYDRLPAA
RDTALQARTLDRAAVREAALAHGICPYYLAQEMARWCDIVIGDYNYYFDSSAMLYALTQL
NGWRVAVLADEAHNLPDRARRMYSATLDQHAFRGARHTAPAALKKPFDRLSREWNALNRE
RDAAYDVLPEVPPKLQSALQNVIASIGDQLAETPQSVDENALRFYFDALHFMSLVEQFGD
HSIVDVTLEAQHGAARAKPATQICVRNVIPAPFLKPRYAAARATIVFSGTLSPQHFYRDM
LGLPDETGWLDVEGPFRAEQLDVHVAHHVSTRWRDRERSLEPIVDLIAQQYAARPGNYLG
FLSSFDYLQRVAGSMRERHPHVPIWTQEPRMDETARDAFLARFTTSGAGVGFAVLGGAFS
EGIDLVGERLVGAFIATLGLPQMNDVNEQMRRTFDAQFGNGYDYAYLYPGMQKVVQAAGR
VIRTEQDAGVVHLIDDRYRRADVKRLLPRWWKVVT
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacatcgtcgccgtgcgcacgctctgcgaattcaccgcgcggcgcggcgatctc
gatctgcgcttcacgcccgcgccgtcggcgctcgaaggcatcgccggccatcaggccgtg
acggcacgccgtgcgtccggctatgaagcggagatcacgctgacgggtacgcatggcggt
ctcacggtgcgtggccgcgccgatggttacgatcccgcgctgaaccggctcgaagaaatc
aagacgcaccgcggcgatcttgaacgaatgcctgcgaatcatcgtgcgctgcattgggcg
caggcgctcgtgtatgggcatctgctgtgcgaggcgcgcgcgctcgacgaactgacggtc
gcgctggtgtacttcgatatcgccgaccagaaggaaaccgtgctgacggagcagcacacg
gccgcatcgctgcgcgcgttcttcgaggatcaatgcgagcgcttcgtcgcgtgggccgcg
cgtgaagaactacatcgcgaggcgcgcaacgccgcattgaatgcgctgcgtttcccgcac
ggcgagtttcgcagcggccagcgtgaactgtccgtggccgtgtttcgcgcggcgcgcgac
gggcgctgtctgatggcgcaggcgccgacgggcatcggcaagacgctcggcacgatcttt
ccgctgctgaaggcgtgcggtgcggatcatctggaccgcgtgttcttcctgacggcaaaa
acgccgggccgcgcgctcgccctcgaagccgtcgaatccctgcatcgcggtgaaaacacg
ctgccgttgcgcacgctcgaactcgtcgcgcgcgacaaagcctgcgagcatcccgacaac
gcgtgcgacggcgaatcctgtccgctcgcgcgcggcttctacgaccgcctgcccgccgcg
cgcgacacggcgttgcaggcgcgcacgctcgaccgcgcagccgtgcgcgaagcggcgctc
gcgcatggcatctgtccgtactatctcgcgcaggaaatggcgcgctggtgcgacatcgtg
atcggcgactacaactattacttcgacagcagcgcgatgctgtacgcgcttacgcagctg
aatggctggcgcgtcgccgtgctcgccgacgaagcgcacaatctgcccgaccgcgcgcgc
cgcatgtacagcgcgacactcgatcagcacgcgtttcgcggcgcgcgccataccgcgccc
gccgcgctgaaaaagccatttgatcgcctaagccgcgaatggaatgcgttgaaccgcgag
cgggatgctgcgtatgacgtgcttcccgaagtacccccaaagctgcaatcggctttgcaa
aacgtgatcgcatccattggcgatcagcttgcagaaaccccgcaatccgtcgatgaaaac
gcgctgcggttctatttcgacgcgctgcatttcatgtcgcttgtcgagcagttcggcgat
cattccatcgtcgacgtaacgcttgaagcacagcatggcgcagcccgcgcgaaacctgcc
acacagatctgcgtgcgcaacgtgattcccgcgccgttcctcaagccgcgctatgccgcc
gcgcgcgcgacgatcgtgttctccggcacgctcagcccgcagcacttctatcgcgacatg
ctcggtctgcccgacgagactggctggctcgacgtcgaagggccgttcagggcggagcag
ctggatgtgcatgtcgcgcatcatgtgtcgacgcgctggcgcgaccgcgagcgttcgctc
gaaccgatcgtcgatctgatcgcgcagcagtacgccgcgcgtccgggcaactacctcggc
tttctgagcagcttcgactacttgcagcgcgtcgccggatcgatgcgcgagcggcatccg
cacgtgcccatctggacgcaggagccgcgcatggacgagaccgcgcgcgacgcgttcctc
gcgcgcttcacgacgagcggcgcgggtgtcggtttcgcggtgctgggcggcgcgttttcg
gaaggcatcgatctggtcggcgagcgcctggtcggcgcgttcatcgcgacgctcggcttg
ccgcagatgaacgacgtcaacgagcagatgcgccgcaccttcgatgcgcagttcggcaac
ggctacgactatgcgtatctgtatccgggcatgcagaaggtcgtgcaggcggcggggcgg
gtgattcgcaccgagcaggatgcgggcgtcgtgcatctgatcgacgaccggtatcggcgc
gcggatgtgaagcgcttgttgccgcgctggtggaaggtcgtgacatag
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