Paraburkholderia sp. 22B1P: PBP221_47640
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Entry
PBP221_47640 CDS
T10680
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PBP221_47640 (pdeR)
Enzymes [BR:
pazz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
PBP221_47640 (pdeR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_8
GGDEF_2
Diguanyl_cycl_sensor
PAS_7
Cas10-Cmr2_palm2
PAS_10
Motif
Other DBs
NCBI-ProteinID:
BEU24624
LinkDB
All DBs
Position
2:1674256..1676259
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AA seq
667 aa
AA seq
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MNDDQHDQVLFARFGTSSPCWRLSSDSNALELTPETDDDTATVAIALSGAQAAQIRRLTG
VTSHLTMDVRLFGEALRLHLVGKKLNSSTWAGTASGYEDTESVARDLVHGLSFAEQVVSE
VNSVVVIVDKNGRIQRFNRLAEELTGMKEEDVVGRSVWALFMSSEAGAASSQNISGFFNQ
GVAYEVERRVRTVHGERLFLFRNKFVMSGSGVDEQFLICSGTDITEERRAQERLSELANT
DSLTGLPNRNAIHDKTRAAIASAAAGESVGILFLDLDNFKKVNDHYGHVFGDRLIQDVSS
AVRECLADEDTLARLGGDEFIVLSPVASVASMEAMAQRILERLRVPFSLGLVEVYTGCSI
GIAMFPEHGDSLEALIRAADTAMYVAKDDGKRTYRVFSPEMNRRVAEYMWLDTNLRRGLE
EGQLTLHYQPKLSLATGTVYGVEALVRWNSPERGQIMPAAFIRYAEESGLIGPLGRWVMQ
TAAEQAAQWKARGLSLRVAINVSARQLVDTAVVSHFTEALQRAQLDPCLLDIELTESCLI
EDEAAAIDLITQFRDLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVSSINADRKSQ
ALVRSMVAVAQALQLKVVAEGIETESEELFMKGLGVEYVQGFLYGRPMPAAEFERWLHDR
QKIRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgatcaacacgatcaggtgcttttcgcccggttcggaacgagcagcccctgc
tggcggctgtcgagcgacagcaatgcgctcgaactgacgcccgaaacggatgacgacaca
gccacggtcgccattgccctgtcgggcgcgcaggccgcgcagattcgcaggctcacgggc
gtcacctcgcatctcaccatggacgtgcgcctgttcggcgaggcgctgcgtctgcatctg
gtcggcaagaagctcaacagcagcacctgggcgggcacggcttccggctatgaagacacc
gagtccgtcgcgcgcgatctggtgcatgggctgtcattcgccgagcaggtcgtgtcggaa
gtcaattccgtcgtcgtgatcgtcgacaagaacggccgcatccagcgcttcaaccggctc
gcagaagaactcacgggcatgaaggaagaagacgtggtcgggcgcagtgtgtgggcgctc
ttcatgtcgtcggaagcgggcgcggcgtcgagccagaacatttcgggcttcttcaatcag
ggcgtcgcgtacgaagtcgagcggcgcgtgcgcaccgtgcacggcgagcggcttttcctc
tttcgcaacaaattcgtgatgagcgggagcggcgtcgacgaacagtttctgatctgctcg
ggcaccgacatcaccgaggaacgccgcgcgcaggaacgtctgtcggaactggccaacacc
gattcgctgacgggcctgcccaaccgcaacgcgattcacgacaagacgcgcgcggccatc
gccagcgcggcggcgggcgaatccgtcggcatcctgtttctcgatctcgacaatttcaag
aaggtcaacgaccactacggccacgtgttcggcgaccggctgatccaggacgtgtcgtcg
gccgtgcgcgagtgtcttgccgacgaggacacgctcgcgcgcctgggcggcgacgagttc
atcgtgctgtcgccggtggcgtcggtggcgtcgatggaagcgatggcgcagcgcattctg
gagcggctgcgcgtgccattcagcctcgggctggtcgaggtctacaccggctgctcgatc
ggcattgcgatgttccccgaacatggcgacagcctcgaagcgctgatccgcgccgccgac
accgccatgtacgtggccaaggacgacggcaagcgcacctatcgggtgttctcgccggag
atgaaccgcagggtcgccgagtacatgtggctcgatacgaacctgcggcgcggcctcgaa
gaaggccagctcacgctgcactatcagccgaagctctcgctggccacgggcaccgtgtac
ggcgtggaggcgctggtgcgctggaattcgccggagcgcgggcagatcatgcccgccgcg
ttcatccgctacgcggaagagtcggggctgatcgggccgcttggccgttgggtgatgcaa
acggcggccgaacaggccgcgcaatggaaggcgcgcgggctgtcgctgcgcgtggcgatc
aacgtgtcggcgcggcaattggtggatacggccgtggtgtcgcatttcacggaggccctg
cagcgcgcgcaactcgatccttgcctgctcgacatcgagctgacggaaagctgcctgatc
gaagacgaagcggccgcgatcgacctgattacgcaattccgcgatctcggcgcgcaggtc
catctggacgatttcggcacaggctattcgtcgctgtcgcagcttgggcgcattccactc
gacgtgatcaagctggaccgcagcttcgtgagttcgatcaacgcggacaggaaatctcag
gcgctggtgcgctcgatggtggccgtcgcgcaggcgctgcaactgaaggtggtggcggaa
gggatcgagacggaatcggaagagctgttcatgaagggactgggcgtcgaatacgtacag
ggttttctgtacggcaggccgatgcccgcagccgaattcgagcgctggctgcatgacagg
cagaagatccgcttgatcgcctga
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