Paraburkholderia sp. 22B1P: PBP221_79480
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Entry
PBP221_79480 CDS
T10680
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBP221_79480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazz03019
]
PBP221_79480
Enzymes [BR:
pazz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBP221_79480
Messenger RNA biogenesis [BR:
pazz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBP221_79480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BEU27808
LinkDB
All DBs
Position
p22B1P1:2260305..2261750
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AA seq
481 aa
AA seq
DB search
MSFASLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPTQR
QTLLFSATFTDDIRAMAAGILRSPVNISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVA
ENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLPREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVPQAASGAMQVPSNKPRPQ
SGENKHKPAAQRAVAADKGTSFSSGSPFSVQKPRSKPASKPAAVSRKPAGKPAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgctcggcctgatcgatcccttgctgcgtaatgtgcaggacctcaat
taccagacaccgacgccggtgcaggtcaaggcgattcctgctgtgctcagcggcaaggat
gtcatggctgcggcgcagacgggcactggcaaaacagcgggttttgcgctgccgcttttg
caacggctggtgcaacatgggcctgcggtgtccagcaaccgcgcgcgtgttctggtgctg
gtgcccacgcgtgaactggctgaacaggtcctgcaaagtttcgtcgcttacggcaaaggc
ctcgacttacgatttctggccgcctacggcggcgtgagcatcaacccgcagatgatgaag
ttgcgcaaaggcgtggatgtgctcgtcgcgacgccgggccgtttgctggatctcaatcgc
cagaacgccgtgcaatttgatcaggtgcaaacgctggtgctggatgaagccgaccgcatg
ctggatctgggcttcgcgcgcgaactcaacgccgtctttgctgccttgcccactcagcgc
cagacgttgctgttctctgccacgtttaccgatgatatccgcgcgatggcggcgggcatt
ctgcgcagcccggtcaatatcagcgtcagcccgcccaatgctacggccagcaagatcaag
cagtgggtggtgccggtagataaaaggaacaagcctgaccttttcatgcacctggtggct
gagaacaaatgggagcatgcactggtgttcgtcaaaacccgcaatggcgtcgattacctg
gcggccatgctggatgaagcgggctatgcggtcgacaccatccacggcgacaagccgcaa
cccgctcgcatgcgtgcgctggagcgcttcaagacgggcgaagtcaatatgctggtcgct
accgatgtggctgcgcgcgggctggatatcgacgacctgccgctggtgatcaacgttgat
ctgccgatcgtggcgcaagactatgtgcaccgtattggtcgtaccggccgcgcgggcgcc
agcggtgtggcggtgtcccttgtgtgtgccgatgaagcgccgcaactggccgcgatcgaa
gcgttgatccggcaaacgctgccccgtgaagaagagccgggttttgaagccgaacaccgc
gtgcccgaaaccagcgcgacgggccagatcatcaagaaacccaaaaagcccaagaagccg
aaagtgccgcaagcagcgtcgggcgccatgcaggtgcccagcaacaagccgcgcccgcaa
agtggcgaaaacaaacacaagcctgcggcgcaacgcgctgtggccgcggataaaggcaca
agcttctccagcggtagcccattcagcgtgcaaaagccacgcagcaagcccgccagcaag
ccagccgcagtttcacgtaagccggctggcaaacccgctggtggccgcggcaaacgccaa
ccctga
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