Paraburkholderia sp. 22B1P: PBP221_83800
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Entry
PBP221_83800 CDS
T10680
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pazz Paraburkholderia sp. 22B1P
Pathway
pazz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pazz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBP221_83800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pazz03019
]
PBP221_83800
03400 DNA repair and recombination proteins [BR:
pazz03400
]
PBP221_83800
Enzymes [BR:
pazz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBP221_83800
Messenger RNA biogenesis [BR:
pazz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBP221_83800
DNA repair and recombination proteins [BR:
pazz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PBP221_83800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_20
RPA_C
TrmB
Motif
Other DBs
NCBI-ProteinID:
BEU28240
LinkDB
All DBs
Position
p22B1P2:complement(245664..247463)
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AA seq
599 aa
AA seq
DB search
MPASTKPTLQAMRRTLSDVFGLESLRPGQREIIESVMHGRDTLAIMPTGAGKSLCYQLPA
LHLNGLTLVVSPLIALMKDQRDKLLAANVEALQINSTLNAAEERQAYEELKTASRAIVFV
TPEQLTKPALLDALRGRDDPYARGRSARRGEVRRVSLIVVDEAHCISQWGHDFRPAFLQI
AEAASSIGSPPVLALTATATTAVVKDIVRTLGMRDPRVLHKGVYRSNLHYSVLQVSVAGG
KGRASARSAQAKLTALRTLLESRSDAGIIYTATVREAERLAAAIREWGVPAALYHGRISS
RQRHDAQDGFMRGDVRVMVATNAFGMGIDKADIRFVVHDQMPGSIGAYYQETGRAGRDGE
AADCVLLFDLNDRRIQQFLQLGRYPGRELIERVREALRKHDGVSTTGVSVDELARILGDV
GRNKLQVALKILLDAGLVRRNRARRYLLRDGAPGGDALSASLHRYDEQAKRDRDALQQMI
DYAQTGRCRWNTILEHFGYGDELEQCGTCDNCRNPPHVEPVREPVLEGRMMDAARETPHA
QRSFVRGQSVRVRKFGIGQVTFATMDQVAVLFSDGTTRTFLARFVRAADATHNAADSRR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
gtgccagcttcgacgaaaccaaccctgcaggccatgcgccggacactgagcgacgtcttc
ggtctcgaatctctgcggccaggtcagcgcgagatcatcgagagcgtgatgcacgggcgc
gacactttggccatcatgccgacgggagccggtaaatcgctttgctaccagttgccggcg
ctgcacctgaacggcctgacgctggtcgtgtcgccgttgatcgcgctgatgaaagatcaa
cgcgacaagcttctcgcagcgaacgtcgaggcactgcagatcaacagcacgctaaacgcc
gccgaggagcggcaagcgtacgaagagctaaaaacggcatcgcgtgcaatcgtcttcgtg
acgcccgaacaactcaccaagccagcactgctggacgcgctccgcggacgggatgacccc
tacgcgcggggacgcagtgcacggcgtggcgaggtacggcgggtaagtctgattgtggtt
gacgaagcccactgcatttcgcagtggggacatgatttcagacccgcgttcctgcagatc
gccgaagccgcgagcagtattggaagtccgcccgtcctcgcgctcaccgccacggcgacg
acggcggtcgtcaaagatatcgtacgcacgctcggcatgcgcgatccacgcgtgctgcac
aaaggcgtctaccggtcgaacttgcattacagcgtccttcaggtgtcggtcgctggcggc
aaaggacgcgcgtcagcgcgttctgcacaggccaagctcactgcgcttcggaccttgctc
gaatcgcgcagcgacgccggtattatctatacggcaacggtgcgcgaagcggaacgtctg
gcggcagcgattcgcgaatggggggtgcctgccgcgctctaccacggacggatcagttcc
cggcagcggcacgacgcgcaggacggcttcatgcgtggcgacgtgcgcgtgatggttgcg
accaacgcattcggcatgggcatcgacaaggctgacatacgctttgtcgtgcatgaccag
atgccagggagcatcggtgcgtactatcaggagaccgggcgagccggacgcgacggcgaa
gcagccgattgcgtgttgctgttcgatctcaacgacaggcgtatccagcaatttctgcag
ctcggtcgctaccccgggcgtgaactcatcgagcgcgtgcgcgaagcgctgcgaaagcat
gacggcgtatcgacgacgggcgtgagtgtggacgaactcgcacgcattctcggcgatgtc
gggcgaaacaaactccaggttgcgctcaagatactgctcgacgccgggctcgtgcgtcgc
aatcgcgcgcgccgctatctgctgcgcgatggcgctcctggcggcgatgccctctcagca
tcgctccaccgctacgacgaacaggcgaagcgcgatcgcgacgcacttcaacagatgatc
gactatgcgcaaacgggccgctgccgctggaacacaatcctcgagcatttcggttatggc
gacgaactcgaacagtgcggcacgtgcgacaactgccgtaacccgccgcatgtcgaacct
gtccgcgagcccgttctcgaaggccggatgatggatgccgcgcgcgagacgcctcacgcg
cagcgcagctttgtgcgtggccagtccgtgcgagtgcgtaagtttggcatcggccaggtc
acctttgcgacgatggatcaggttgccgtactgttttctgatgggacgacgcgcacgttc
ctcgcgcgattcgtcagggctgcggacgcgacgcacaacgcagccgatagccgacgctga
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