Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a1080
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Entry
PSEBR_a1080 CDS
T01472
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03030
DNA replication
pba03430
Mismatch repair
pba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSEBR_a1080
03430 Mismatch repair
PSEBR_a1080
03440 Homologous recombination
PSEBR_a1080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pba03032
]
PSEBR_a1080
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a1080
Enzymes [BR:
pba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSEBR_a1080
DNA replication proteins [BR:
pba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSEBR_a1080
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSEBR_a1080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AEA67254
UniProt:
F2KDT5
LinkDB
All DBs
Position
1356279..1359800
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRTNRPNDEEH
LHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDPRRSKNYSNQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFQDEP
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKLQTQDLKGDQLRWLGELFKRHRGACPITMEYVRPDAKAV
LQFGEGWRIDPADALIQALRDQFGKDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatactccctggtcgacggtctg
gtgcggatcaagcccctggtcaagaccctggtgggcatgaacatgcctgccgtggcggtc
accgaccagaacaacatgtgttcgctggtcaagttctacaaggcagccatgggcgccggg
atcaagccgatctgtggtgccgacctgtggctgtcgaacaaggatccggacgctccgctg
agccgtatcagcctgttggtgatgaacgctctgggttatcgcaacctcaccgagctgatc
tcccgtggttttatcgacggccagcgcaacggctcgatcatcatcgagcgcgagtgggtg
gccgaggccagcgaagggctgatcatgctgtcggcggccaaggaaggtgaaatcggcctg
gcgctgctcagtggcaaccccgaggaagccgagaccctggctcgtgactggatgtcggtg
ttcccggatcgcttctacatcgaagtgcagcgcaccaatcgtccgaatgacgaagagcac
ctgcacgccgccgtggccctggccgacaagatcggcgcgccgctggtggcgaccaacgat
gtgcggttcatcaagcaggacgatttcgaagctcacgaaacccgcgtttgcatcggtgag
ggccgtgccctcgatgatccgcggcggtcgaagaactacagcaaccagcaatacctcaag
agcgccgaggaaatggccgagttgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgacgtgaagctgggcaaacacttcctgcccaacttc
ccgatccccgatggcatgaccatcgacgagtatttccgcaaggtgtccttcgacggcctt
gaggagcgcctcagcgtcctgttgcccaaggacaccaccgaagattacgaagccaagcgc
caggtctatgtcgaccggttgaatttcgagctggatatcattatccagatgggctttccc
ggctatttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggtg
ggcccaggccgtgggtcgggtgccgggtcgctggtggcctatgtgcagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgtttcctcaacccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgggtgatcgattacgtg
gccgagaagtatggccgcaacgcggtgagccagatcatcaccttcggttccatggccgcc
aaggctgtggtgcgcgacgtggcgcgggtgcagggcaagtcctacggcttggcggatcgt
ctgtcgaagatgattccgttcgaagttggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgggacttcatcaaggtcgatgaagaagccgcggaaatctgggagatggcc
cgcaagcttgaaggcgtggtgcgtaacgtcggcaagcacgccgggggcgtggtgatcgcg
ccgaccaagctgactgacttctcgccgatctattgcgacgaagaaggcgacggcctggtg
acccagttcgacaaggatgacgtcgaggcggcgggcctggtgaagttcgacttcctcggc
ctgcgcaccctgaccatcatcgactgggcgctgaaaaccatcaaccgtgaccgggccaag
gtcggtgaagaaccgctggacatcgccttcatcccgctggatgacaagccgacctacagc
ctgttgcaaaaagccgaaaccacggcggtgttccagcttgaatcccggggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacctgatcgcactggtggccctgttt
cgtccgggcccgttgcaatcgggcatggtggatgacttcatcaaccgtaagcacggccgc
gccgagctggcgtacccgcactcggactatcagtacgaaggcttgaaaccggtgctcgca
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtcatggcc
ggttacaccctcggcggcgcggacatgctgcgtcgggcgatgggtaagaaaaaacccgag
gaaatggccaagcagcgcggcggtttcatcgagggttgcgccaccaacggcatcgaccct
gacctggccggtaacattttcgacctggtggaaaagttcgccggctacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcgtggctgaaggcgcactat
ccggcgccgttcatggccgcggtactgtcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcggaccatgaagttgcgcctcgacgcaccggacgtgaacgct
tcggagttcaagttcacggtgaacgacgaaggccgcatcatttacggcctgggcgcgatc
aagggtgtgggcgaggggccggtggaagccattaccgaagcgcgccaggacgggccattc
aaggacctgttcgatttctgcgcccgggttgacctcaagcgcatcaacaagcgcaccctc
gacggattgatccgcagtggtgccctggaccggctgggaccttacttccaggatgagccc
aaggcctaccaggccaacatcgaccgcaaccgcgcggtgttgctggcggcgatggaggag
gcgatcaaggccgccgaacagaccgcccgtacccatgacagcggccacgccgacctgttt
ggcgggctgttcgtcgaagaagacgccgatgtctatggcaaccatcgcaaggccaaggag
ctgaccctcaaggaacgcctcaagggtgagaaagacaccttgggcctgtacctcaccggt
cacccgatcgacgaatacgaaggcgagatccgccgcttcgcccgtcagcgcatcatcgac
ctcaagccggcacgcgacacgcagaccgtcgccggcatgatcatcgccctgcgggtgatg
aagaacaaaaagggcgacaagatgggcttcatcaccctcgacgaccgctccgggcgcatc
gaggcctcattgttcgccgatgcgttccactcggcgcagtcgctgttgcagactgacgcg
atggtggtggtggaaggcgaggtcagcaacgatgacttttccggtggcctgcgcctgcgg
gtcaagcgggtgatgagcatggaagatgcccgtaccaacctggctgaaagcctgcgcctg
aagttgcagacccaggatctcaagggcgatcagctacgctggttgggcgaattgttcaag
cgccatcgcggtgcctgcccgatcaccatggagtatgtacgccccgacgccaaggctgtg
ttgcagttcggcgaaggctggcggatcgatccggcggatgcgttgattcaagccttgcgt
gaccagttcggcaaagacaacgtcttcctccaataccgttga
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integrated database retrieval system
