Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a1366
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Entry
PSEBR_a1366 CDS
T01472
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pba03016
]
PSEBR_a1366
Enzymes [BR:
pba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PSEBR_a1366
Transfer RNA biogenesis [BR:
pba03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSEBR_a1366
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AEA67556
UniProt:
F2K8T1
LinkDB
All DBs
Position
1672139..1673272
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGKRAYLIDPL
TIDNWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVLLRPKLSDEKYRWV
LEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRII
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGQFLLDLIQRAASVPPEQWPPAVAEPL
PIEASALVKRLRALGQAEAERLEIAPELMLRKKTLEALIKSGFPEGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcagttttgcgccgag
tggcagcagttgccattcgtcgccctcgacaccgaattcatgcgggtcgacactttttac
ccgattgccggtttattgcagatcggcgacggcaagcgcgcctacctgatcgaccccttg
accatcgacaattggcaacccttggccgcactgctggaaaacccggcggtgctcaaggtg
ttgcacgcctgcagcgaagaccttgaagtgctgctgcgcctgaccggcagcctgcctgcg
ccgctgttcgatactcaattggccgctgcctacctgaacctgggtttctccatgggctat
tcgcggctggtgcaggaagtgctgggtatcgagttgcccaagggcgagacccgttccgac
tggctgcaacggcccctgtcagagacgcagatcagctacgcggcagaggatgccgtgcac
ctggcagaagttttcgtactgctgcgcccgaagctttccgacgaaaaataccgttgggtc
ctggaagacggcgccgaactggtggccaacctgcgtcgcgaagtcgacccgtacgaggtc
taccgcgaggccaagctcgcctggaaactgtcccgcgcccaattggccgtgctgcgcgag
ctgtgcgcctggcgcgaacgcgaggcgcgggcccgtgacctgccgcgcaatcgcatcatt
cgtgagcattcgctgtggcccctggcccgtacccagccggacaacctcggcgcgttggcg
aagatcgaagacatgcacccgcgcaccgtgcgccaggacggccagtttctgctggacctg
atccagcgcgccgccagcgtgccgcccgagcaatggccgccggccgtggccgagcccttg
cccatcgaggcctcggccctggtcaagcgtctgcgggcgctggggcaggcagaagccgag
cgcctggaaattgccccggagctgatgctgcgcaagaaaaccctcgaagcgctgatcaag
agcggcttccccgagggcccttaccaattgcccgattcgttgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctcgacagcctggccactgccggagaacagccttga
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