Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a1435
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Entry
PSEBR_a1435 CDS
T01472
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEBR_a1435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pba03019
]
PSEBR_a1435
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a1435
Enzymes [BR:
pba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSEBR_a1435
Messenger RNA biogenesis [BR:
pba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSEBR_a1435
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSEBR_a1435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
Sigma70_r4_2
Sigma70_r1_2
GerE
Motif
Other DBs
NCBI-ProteinID:
AEA67630
UniProt:
F2K905
LinkDB
All DBs
Position
1757293..1759419
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLATRIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VDEVAAFLCEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVETWDATEPARQALSAIFRTG
QRYGVGHLVDVLLGKDNEKVRSFGHQHLSVFGVGKARTEGEWRSLFRQLVARGLADIDLE
GYGGLRLSATCRPLLKGEVTLELRRDLKPATAVKSSKSQASQLVRGEERDQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAEMAQVSGVGARKLERYGEAFLQVLGGEAE
APKAVADVRHELITLARAGMTPLQIAGQLQCSEKNVYTMLAEAIGKQQLSLEQALDLPEE
LMGEVQDAFLDGEGELPPVSEVAALFVGRVPEGVLYCVRAALQSEFEV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgccagggtgccattattgagcgcgtggccagcggtggcgatgccctggtgctcatgccc
accggcggcggcaaatccttgtgcttccaggtcccggcgctgttgcgcaacggcctggcc
gtggtggtctcgccgctgatcgcattgatggacgaccaggttgcgaccctcgaagagctg
ggggttgccgctgcttcgctgaactccactctcagcgccgagcaacagcgggacctggcg
acacgcatcaagcgcggcgaagtgaagatgttgtacctggccccggaacgcctggtgcag
ccgcgcatgctggcgttcctgcagagcctggaaattgccctgttcgccatcgacgaagcc
cactgcgtatcccaatgggggcacgatttccgacgcgaatacctgcaactggggcaactg
gcggaactgttccccgacgtaccgcgcatcgccctgaccgccaccgccgacaagcgcacc
cgcgaggaaatcgtcgagcgcctgcacttgcagaacgccgagcgcttcctgtccagtttc
gaccgtccgaatattttctaccgcatcgtacccaaggagcagccgcgcaagcagttgctg
gcgttcctcgccgagcgccgcagcgatgccggcattgtctattgcctgtcgcgcaagaag
gtcgatgaagtggcggcgttcctgtgtgagcaggggttcccggcgctgccgtatcacgcc
ggcctgcccaacgacctgcgggcctatcaccagaagcgcttcctcaacgaggaaggcctg
atcatggtggccaccattgcgttcggcatgggtatcgacaaacccaacgtgcgctttgtc
gcgcacctggatctgcccaagtcccttgaggcgtattaccaggaaaccggacgtgccggc
cgtgatggcttgccggccgacgcctggatggcctacggcctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcgccataagcgtctggaacagcacaag
ctcgacgcgatgctctcgctgtgcgaggaaacccgctgccgccgccagaccttgctggcc
tattttgacgaagacatgccccagccttgcgggcattgcgacaactgcgtcgatggcgtg
gaaacctgggacgccaccgaaccggcccgccaggccttgtcggcgattttccgtaccggc
cagcgctacggtgtcgggcatctggtggacgtgttgctgggcaaggacaacgaaaaggtc
cgcagctttggccaccagcacctgtcggtgttcggcgtgggcaaggcgcgcaccgagggt
gagtggcgttcattattccgacaactggtggcccgcggtctggccgacatcgacctggaa
ggctacggcggtctgcgcctgagtgcgacttgccggccgttgctcaaaggtgaggtcacc
ctcgaactgcgtcgtgacctcaagccggcaacggcggtcaagagcagcaagagccaggcc
agccaactggtacgtggcgaagagcgcgatcaatgggaagccttgcgggccttgcggcgc
aagctggccgaggagcacggcgtcccgccgtacgtcatcttccccgactcgacgctgctg
gaaatgctccgcagtcagcccacctccctggcggaaatggcccaggtcagtggtgtgggc
gcgcgcaagctggagcggtatggcgaggccttcctccaggtcctgggtggcgaggccgaa
gcaccgaaagcggtggccgatgtacgtcacgaactcattacgctggcccgggccggcatg
acaccgttgcagatcgccgggcaactgcagtgctcggaaaagaacgtctacacgatgctg
gccgaagccattggcaaacagcagttgtccctggaacaggcgctggatctgcccgaagag
ctgatgggagaggtgcaggatgccttcctggatggcgaaggcgagttaccacccgtgtct
gaagttgccgcgctgtttgtcggacgggttcccgaaggcgtgctgtattgcgtcagggct
gcgttgcagtctgaatttgaagtctga
DBGET
integrated database retrieval system
