Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a1625
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Entry
PSEBR_a1625 CDS
T01472
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEBR_a1625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pba03019
]
PSEBR_a1625
03009 Ribosome biogenesis [BR:
pba03009
]
PSEBR_a1625
Enzymes [BR:
pba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSEBR_a1625
Messenger RNA biogenesis [BR:
pba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSEBR_a1625
Ribosome biogenesis [BR:
pba03009
]
Prokaryotic type
rRNA helicases
PSEBR_a1625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AEA67829
UniProt:
F2K9C4
LinkDB
All DBs
Position
1973182..1974855
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctcaacccgaacattctcgctgcc
gtcactgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggccaggcgcaaaccggtacgggtaaaaccgctgcgttc
gccctgccgatcctgcatcgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgctttcgaaacctattccaagcag
atgcctggcgttactgttgtggccgtttacggcggtgccccgatgggcccacaactcaaa
gccatccgtaatggcgcgcagatcgttgtcgccactccgggtcgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctggccaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggtttcatggatgacctggaagtcatcttcaaggccctgccagcaacc
cgccagactgtattgttctcggccaccctgccgcaatcgatccgcgccattgccgagcgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgtcaccgcgatc
gaacaggctcacctgctggttcacgctgaccagaagacgtctgccgttctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctggacgttccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccggaatcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggccgtgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaactggccagaaggtagctgaagttcgcctgccggacgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccactggtggctgacgccgaatcg
acccacggtgatctgctcgatcgcctgaccgccgacatcggttgcagccctcgcgccctg
gccgccgcactgctgcgcaaggccaccaatggccaagcgctgaacctggctgcaatcgag
aaggaacgtcccctggtgccgaacaacgcaccgcgtggcgatcgtcctgagcgcaccggt
gatcgtccggatcgtggtgatcgcgagcgtcgtgcgccgatcccgctggccgaaggtcgt
gctcgctgccgtaccgcgctgggtgcccgtgacggcatcgctgccaagaacctgctgggt
gccatcctcaacgaaggcggcctggcccgcgaagctatcggccgcattcaggtgcgtgac
agcttcagcctggtagagctgccggaagatggtctggagaagttgctgaccaagttgaaa
gacactcgtgtggctggcaagcagctcaagctgcgtcgctatcgcgaagattga
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