Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a40
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Entry
PSEBR_a40 CDS
T01472
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03030
DNA replication
pba03410
Base excision repair
pba03420
Nucleotide excision repair
pba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSEBR_a40
03410 Base excision repair
PSEBR_a40
03420 Nucleotide excision repair
PSEBR_a40
03440 Homologous recombination
PSEBR_a40
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pba03032
]
PSEBR_a40
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a40
Enzymes [BR:
pba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSEBR_a40
DNA replication proteins [BR:
pba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSEBR_a40
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PSEBR_a40
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSEBR_a40
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
Obc1_cap
GPAT_N
Motif
Other DBs
NCBI-ProteinID:
AEA66158
UniProt:
F2KAF9
LinkDB
All DBs
Position
45659..48427
Genome browser
AA seq
922 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDALYAEYKANRPSMPDDMRVQIEPLHASVKALGFPLLCVDNVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVATLPIRGAKTLAAKLEEHKEM
ALLSYELATIKTDVPLDVGLDDLQMGTPDHEKLAELYTLLEFKSWFEENQRDAKRAGQEI
VEVAEEQPGAAEAKYEVILDQAHFDAWLAKLDKAPLFAFVTETNGGDAQHSQLVGLSFAV
APYEAAYIPLTHSYMGVPEQLDRDTVLKALKPLLENPNKLKVGQHAKFETNILANCAIGG
DQNNGILVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGQSKTDFQDIAGKGVKQLTFD
QISLELAGPYAAEDADVTFRLHQALQEKLAATPSLGTVLNDIEMPLMPVLARIERQGALV
DANLLGVQSVELGEKLVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPVLSKTAKGQA
STAEAVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINSRTGRVHTNYQQAVAAT
GRLSSIDPNLQNIPIRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYA
FRHNLDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQA
YIDRYFARYPGVLAYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPALRKGAERTAINA
PMQGTAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRDEIRQHMSA
AATLDVPLLVEVGVGNNWDEAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcttcttatctgtaccgcgcctttcac
gcgctgccaccgctgaccacgtccaaaggcctgccgaccggtgcggtcaagggcgtactg
aacatgctcaagagcctgcgcaagcagtatccagacagtccgttcgccgtggtcttcgac
gccaagggtgggacttttcgcgatgcgctgtacgccgaatacaaggccaaccgcccgagc
atgcccgacgacatgcgcgtgcagatcgagccgttgcatgccagcgtcaaggccctgggc
ttcccgctgctatgcgtggacaacgtcgaagccgatgacgtgatcggcaccctggcccgc
agcagcgcggcggccgaccgtccggtggtgatctccactggcgacaaggacatggcgcag
ttggtcgacgggcacattaccttggtcaataccatgaccggtagcgccctggacgtggct
ggcgtgaaggagaagtttggcgtcgctcccgagcagatcatcgattacctggcgttgatg
ggcgattcttccgacaacatcccgggcgttccgggtatcggaccgaagaccgcttccggc
ctgctggtgggcgtcaatggcggcctgaccgagctgtatgcgcaactggacatcgtcgcc
accttgccgatccgtggcgccaagaccctggccgccaagctcgaagagcacaaggaaatg
gcgttgctttcctacgagctggcgaccatcaagaccgacgtaccgctggatgtcggcctc
gacgacctgcaaatgggcacgcccgatcacgagaaactcgccgagctgtacacgctgctg
gaattcaagagctggttcgaagagaaccagcgggacgccaagcgtgccggccaggagatc
gtcgaagttgccgaagaacagcccggcgctgccgaggccaagtacgaggtcatcctcgat
caggcgcacttcgacgcgtggctggccaaactggataaagcgccgctgtttgccttcgtc
accgaaaccaacggcggcgatgcccagcattcgcaactcgtcggtttgtcgttcgccgtg
gccccttacgaggcggcttacatcccgctgacccactcctacatgggcgtgccggagcaa
ctggaccgcgacacggtgctcaaggcgctcaagccgctgctggaaaacccgaacaagctc
aaggtcggccagcacgccaagttcgaaaccaacatcctggccaactgcgccatcggtggc
gaccagaacaacggcatcctggtccagggcatcgccttcgacaccatgcttgaatcctac
gtgctggactccaccgcgacccgccacgacatggacagcctggcgctcaagtacctgggc
caaagcaagaccgatttccaggacattgcgggcaaaggggtcaaacagctgactttcgac
cagatctccctggaactggccggcccttacgccgccgaagacgccgacgtgaccttccgc
ctgcatcaggctttgcaggaaaagctggccgccacgccaagcctgggcacggtgctcaac
gacatcgaaatgccgctgatgccggtcctggcgcgcatcgagcgccagggggctttggtc
gatgccaacctgctgggtgtgcagagtgtcgagttgggcgagaaactggtggcgctggag
cgtgaggcgtttgccatcgccggcgaggaattcaacctgggctcgccgaagcaattgggt
gtgatcctgtatgaaaagctcggcttgccggtgctcagcaaaaccgccaagggccaggcg
tccaccgccgaagcggtgctcgccgagctggcagagcaggattacccgctgcccaaggtg
ctgatgcagtaccgctcgctgagcaagctcaagagcacctacaccgatcgcctgccggag
cagatcaacagccgcacgggccgcgtccataccaattatcaacaggccgtcgccgcgacc
gggcgcctgtcgtccatcgacccgaacctgcagaacattccgatccgcacgtccgaaggc
cgacgtatccgccaggcgttcgttgcgccgaaaggctacaagctgctggcggcggactac
tcgcagatcgaactgcggatcatggcgcacctggccaaggacgaaggcctgctttatgcg
tttcgccataacctggatgtgcaccgggccaccgctgccgaggtgttcggcgttgagctg
gaagccgtcaccctggaccagcgccgcagcgccaaggcgatcaacttcggcttgatctac
ggcatgagcgcgttcggcctggccaagcagatcggcgtcgatcgcaagcagtcccaggct
tacatcgaccgctacttcgcccgctacccgggtgtgctggcgtacatggaacgcacccgc
gcccaggcggccgagcaaggttttgtcgaaaccattttcggtcgccggttgtacctgccg
gacatcaacgcgaaaaatccggccctgcgcaaaggcgccgagcgcacggccatcaatgcg
ccgatgcagggcacggcggctgacatcatcaagaaagccatggtggctgtggaccgctgg
ctgacaacgtccgggctggatgcgaaggtcatcctgcaggtacacgacgaactggtgctg
gaagtgcgtgaagacctggtcgaccaggtacgcgacgaaatccgccagcacatgagcgcc
gccgccacgctggacgtgccgctgctggtggaagtgggcgtgggcaataactgggacgag
gcgcactga
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