Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a4059
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Entry
PSEBR_a4059 CDS
T01472
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEBR_a4059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pba03019
]
PSEBR_a4059
03009 Ribosome biogenesis [BR:
pba03009
]
PSEBR_a4059
Enzymes [BR:
pba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSEBR_a4059
Messenger RNA biogenesis [BR:
pba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSEBR_a4059
Ribosome biogenesis [BR:
pba03009
]
Prokaryotic type
rRNA processing factors
PSEBR_a4059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AEA70460
UniProt:
F2KK84
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All DBs
Position
4968093..4971281
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AA seq
1062 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVA
APVAAPAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPATTERPTRNEERRNGRQQT
RNRNGRRDEERKPREERAPREERAPREPREERQPREVREEAPAVAREERAPRPPREERQP
RAPREDRKPRGEREERVRELREPLDAAPAAAAATAEERPARQPREERAPRPPREERQPRA
EQAAAAASEEEVLNTEEQLQEDGQDTAEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGS
EESESTENAEAPSAADLAAGLAVTAAVASSAISAPAEAQAHEQAERATAAVESAPVAEAP
VVEATTPVETTASPEVEVAPAHEAQVAETEVVAEPAPVVEQPVVAAEPAFEAPAEEKAPE
PAREEQTAFNWTAEPVAPAPVVEPEPTPEPVKAVEPEVVEPAPVVEAPVVVEAPAPVEEP
APASALTANGRAPNDPREVRRRKREAERLQKEAEQAAAAAAQAPAVEPAPVVEEVAEAAP
APVAEAPAESAPTFDEPQHTAEEVVPRHTEALEKEHEPKPHA
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgc
ctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaacatctataaa
ggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaggcccctgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtccaggtcgaa
aaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tacctggtcctgatgccgaacaaccctcgcgccggtggcatctcccgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagccctgaacggcctggttgccccggcggacatgggc
ctgatcgtgcgcactgcaggccttggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctccgcgccgttc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggac
atcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgaccttcattcgc
caggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtcgaactgccg
tccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcccgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcg
gccgaggaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtccgtgaatgc
ctggaagccgaccgcgcccgcgtacaggtcggtcgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgtccgtccctgggcgaaagcagcggcatcgtttgcccgcgt
tgcaacggcacgggcatcatccgtgacgtcgagtcgctgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaggtgccgatcccg
gtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgtacc
cgcgcccgtatcgtcatcctgccgaacgatcacctcgagacgccgcacttcgaagtgcag
cgcctgcgcgatgacagcccggaagcccacaccaaccagtccagctacgaaatcgctgct
gccgctgccgaagtggaagaagtccagccggccgccgccactcgcaccctggttcgccag
gaagccgcggtcaagaccgctccggcccgcgccaacgctccggttccgaccgaagtggcc
gctccggttgccgccccggccgctgcaccagagccaagcctgttcaaaggcctggtgaag
tcgctggtcagcctgttcgccaccaaggaagaacctgctgccccggccgtcgtcgccaag
cctgccacgaccgagcgtcctacccgcaacgaagaacgccgtaacggtcgccaacagacc
cgcaaccgcaacggtcgtcgtgacgaagaacgcaaacctcgcgaagagcgtgcaccgcgt
gaagaacgcgcgccacgtgagccgcgtgaagagcgtcagccgcgcgaagttcgtgaggaa
gcgccagccgtagcccgcgaagagcgtgcaccgcgtccgccgcgtgaagaacgccagccg
cgcgcaccgcgtgaagatcgcaagccacgtggcgagcgtgaagaacgtgttcgcgaattg
cgcgagccactggatgccgccccggctgctgccgccgccaccgctgaagagcgtccggct
cgccagcctcgtgaagaacgtgcaccgcgtccgccacgtgaagagcgccagccacgcgcc
gagcaggcagccgccgctgccagcgaagaagaagtgctgaacaccgaagagcagttgcag
gaagacggccaggacaccgccgaaggcgatcgtccacgccgccgctcccgtggccagcgt
cgtcgcagcaaccgtcgtgagcgtcagcgtgacgccaacggcaacgtgatcgaaggttcg
gaagagtccgagtccaccgagaacgctgaagcgccaagcgctgccgacctggccgccggc
ctggccgtgactgccgccgttgccagcagcgcaatcagcgccccggccgaagcccaggct
cacgaacaagccgaacgcgctaccgctgccgtggaaagcgcgccagttgctgaagctccg
gtagtcgaagccactactccggtagaaaccactgcttcgccagaagtggaagtcgccccg
gcccatgaagcccaggttgctgaaactgaagtggtcgccgagcctgcaccggtcgtcgag
cagccagtggtagccgctgagccggccttcgaagcaccggccgaggaaaaggccccagag
cctgcccgcgaggagcagactgcgttcaactggaccgccgagccagttgcaccggcacct
gttgtcgagccagaaccgacaccagaacccgtgaaagcggtcgagccagaagtggtcgag
cctgctccagtggtcgaagcacccgtggttgtcgaagcaccggccccggttgaagagcca
gcacctgccagcgccctgaccgcaaatggccgcgcgccgaacgatccgcgtgaagtgcgt
cgtcgcaagcgtgaagccgagcgtctgcagaaggaagccgaacaagctgccgctgctgcc
gctcaagcgcctgctgtcgaaccagctccagtcgtggaagaagtcgccgaggcagcccct
gccccggtcgccgaggccccggctgaatcggctccaacgttcgacgaacctcagcacact
gctgaagaagtcgtgccgcgtcacactgaagccctggaaaaagagcacgagcctaaacct
cacgcctga
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