Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a4924
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Entry
PSEBR_a4924 CDS
T01472
Name
(GenBank) Putative exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03030
DNA replication
pba03430
Mismatch repair
pba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSEBR_a4924
03430 Mismatch repair
PSEBR_a4924
03440 Homologous recombination
PSEBR_a4924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pba03032
]
PSEBR_a4924
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a4924
Enzymes [BR:
pba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSEBR_a4924
DNA replication proteins [BR:
pba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSEBR_a4924
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSEBR_a4924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AEA71346
UniProt:
F2K5Q7
LinkDB
All DBs
Position
complement(5960460..5961071)
Genome browser
AA seq
203 aa
AA seq
DB search
MERIAVIDFETTGITPSSSCRATEIAVVMLEQGRIVDRYQSLMNAGVRVPAFIEQLTGIS
NAMLRSAPSAEKVMNEVNEFVGITPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLLLA
RRLMPAAPNHKLGTLNTFAGLPHTGQAHRAMADAEMAANLTAHLASQLRQKHGLRELSHD
LLCSLQKVPAAKINEHLKRHRGF
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgcatcgcagtcatcgactttgaaaccaccgggatcaccccgagcagcagttgc
cgggctactgaaatcgcggtggtgatgcttgagcaaggccggatcgtcgaccgctaccag
agcctgatgaatgccggtgtgcgcgtccctgcgtttatcgagcaactgaccggcatcagc
aacgccatgctgcgcagcgccccgtcggcggaaaaggtgatgaacgaggtcaacgaattc
gtcggcatcacgccgctgctggcgcacaacgctgcgttcgaccagaagttctgggatttc
gaactggggcgaatcaagcgcacccgcctgcagaattttgcctgctcactgttgctggcc
cggcgcctgatgccagcggcgccgaaccacaagctcggcacgctcaacacgttcgccggc
ctgccccataccggccaggctcaccgggccatggccgacgccgaaatggccgccaacctc
accgcgcacctggcttcgcaattgcggcaaaagcatgggctgcgggagttgtcccatgat
ctgttgtgcagtttgcagaaagtgccggcggcgaagatcaacgagcacctcaagcggcat
cgcgggttctaa
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