Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a5069
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Entry
PSEBR_a5069 CDS
T01472
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSEBR_a5069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a5069
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSEBR_a5069
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSEBR_a5069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
AAA_16
AAA_23
RsgA_GTPase
AAA_33
DnaJ_CXXCXGXG
Viral_helicase1
nSTAND3
cobW
HUTI_composite_bact
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEA71504
UniProt:
F2KLW1
LinkDB
All DBs
Position
6128178..6131012
Genome browser
AA seq
944 aa
AA seq
DB search
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC
PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKGEHLMVFEELRAQGFVRARVN
GKLCELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLVNGELT
LAEGAIRGWDRRNVYYFQMLGSLAAHYKFSLDMPFNELPADQQKFILQGSGSQNVDFKYL
NDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARHV
WVGEKTLPAVTNLPIGDATDYFGGLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTV
IVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAEVMAHPDSLTGKYLSGRVKIKVP
AKRTPRNKKLSLTLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSATA
LNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYK
GKNIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLS
RELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIAVGTPEQVAEMKQSYTGYYLKPLLERDRD
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
ttggacaagatcctgattcgtggggcccgtacccacaacctgaagaacatcgacctgacc
ctgccacgggacaagctgatcgtcatcaccggcctgtccggatccggcaaatcatccctg
gccttcgacacgttgtacgctgaaggccagcgacgctatgtcgaatcgctgtcggcctac
gcccggcagttcctgtcgatgatggaaaaacccgacgtcgacaccatcgaaggcctgtcg
ccggccatttccatcgaacagaagtcgacctcccataacccccggtcgacggtcggcacc
atcaccgagatctacgactacctgcgtttgctgtatgcgcgggtcggcattccccgctgc
cccgatcacgatattcccctggaagcccagaccgtcagccagatggtcgacctggtgctg
gcccagccggaaggcagcaagctgatgctgctggcgccagtgattcgcgagcgcaagggc
gaacacctgatggttttcgaagaactgcgcgcccagggcttcgtgcgggcccgggtcaac
ggcaaactgtgcgaactggacgaattgccgaagctggataagcagaagaagcattcgatc
gatgtagtggtcgaccgcttcaaggtccgggccgacctgcaacagcggctggccgagtcc
ttcgagacggcgctgaaactggccgacggcatcgccctggtcgcgccgatggacgacgag
cctggcgaggaaatcattttctccgcgcgcttcgcctgcccgatctgcggccacgccatc
agcgagctggaacccaagctgttctccttcaacaacccggctggcgcctgcccgacctgc
gacggcctgggggtcaagcagttcttcgacaccaagcggctggtcaatggcgagctgacc
ctggccgaaggcgcgattcgcggctgggacaggcgcaacgtctattacttccagatgctc
ggttcgctggcagctcattacaagttcagcctggacatgccgttcaacgagttgcccgct
gaccagcagaaattcatcctgcagggcagcggctcgcagaatgtcgacttcaaatacctc
aacgaccgcggcgatatcgtcaagcgctcacacccgttcgagggcatcgtgccgaacctg
gagcgacgctaccgcgagaccgaatcggccagcgtgcgcgaagaactggccaagttcctc
agcacccagccctgcccggattgccgtggcacccgtctacgtcgcgaagcgcggcatgta
tgggtcggcgagaaaacgctgccggcggtgaccaacctgccgattggcgacgccaccgat
tatttcggcggtttgaagctcaccggccgtcggggcgaaatcgctgacaagatcctcaag
gaaatccgcgagcgcctgcagttcctggtgaacgtcggcctggattacctgaccctcgat
cgcagcgccgacaccctgtccggcggcgaagcccagcgtatccgcctcgccagccagatc
ggcgccggcctggtgggggtgatgtacatcctcgacgagccatccatcggcctgcaccaa
cgggataacgaccggttgctcgggaccctgaagcacctgcgggacatcggcaacacggtg
atcgtggtcgagcacgacgaggacgccatccgcctggccgactacgtggtcgacatcggc
ccgggcgcgggcgtgcatggcgggcatatcgtcgcccagggcaccgctgccgaagtcatg
gcgcaccctgactcgttgacgggcaaatacctgtcgggtcgggtcaagatcaaggtcccg
gccaaacgtacgccgcgcaacaagaagttgtcgctgaccctcaagggtgctcgcggcaac
aatttgcgcaacgtcgacctggaaatcccgatcggcctgctgacctgcgttaccggcgtg
tccggctccggcaagtcgacgctgatcaacaacaccctgttccccctcagcgccacggcc
ctgaacggcgccaccaccctggaagcggccgcccacgacagcatcaagggcctggagcac
ttggacaaggtggtcgacatcgaccagagcccgattggccgcaccccgcgttcgaacccg
gcgacctataccgggctgttcacaccgatccgcgaactgttcgccggcgtgccggagtcc
cgttcgcgtggctacggcccagggcgtttctcgttcaacgtcaagggcgggcgctgcgaa
gcctgccagggcgatggcctgatcaaggtggaaatgcacttcctgccagacatctacgtg
ccgtgcgatgtgtgcaagagcaagcgctacaatcgcgagaccctggagatcaaatacaag
ggcaagaacatccacgaaaccctcgagatgaccatcgaggaggcccgggtgttcttcgac
gcggtgccggccctggcgcgcaagctccagacgctgatggatgtcggcctgtcgtatatc
aagctggggcagtcggcaaccacgctgtccggcggtgaagcccagcgggtcaagttgtcc
cgcgagctgtccaagcgcgacaccggcaagaccctgtatatcctcgacgagccgaccaca
ggcctgcacttcgccgatatccagcaattgctcgacgtgctgcaccgccttcgtgaccac
ggcaacaccgtggtggtgatcgaacacaacctggacgtgatcaagaccgctgactggctg
gtggacctggggccggaaggcggctccaagggtggccagatcatcgccgtagggacgccg
gaacaagtggccgagatgaagcagtcctacaccggctactacctcaagccgctgctggaa
cgtgatcgggactga
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