Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a5286
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Entry
PSEBR_a5286 CDS
T01472
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEBR_a5286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pba03019
]
PSEBR_a5286
Enzymes [BR:
pba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSEBR_a5286
Messenger RNA biogenesis [BR:
pba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSEBR_a5286
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEA71782
UniProt:
F2K655
LinkDB
All DBs
Position
6402680..6404548
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AA seq
622 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKPASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDI
DNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPPA
KRSGPRNGAPRDGQARRDDTRPRRPARDDQPRQEPAVQNPRSNQPKIVHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tatacccagcctaccccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcgcagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgttccccaacggtcacccagacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactggcagcccaggtacacgagagcttcaag
gtctacgctcgcgacctgaagttcgtcagcgcctgcatttttggcggtgtcggtatgaac
ccccaggtccaggccatgtcccgtggcgtcgatgtactggttgcctgccccggtcgcctg
ctggacctggccggccagggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtcctcgctcgc
ctgcccgccaagcgtcagaacctgctgttttcggcgacgttctccaaggacatcaccgac
ctggctggcaagctgctgcacaacccggagcgcatcgaagtcacgcctccgaacaccacg
gtcgagcgcatcgagcaacgggttttccgcctgccggccagccacaagcgtgccctgctg
gcgcacctgattaccgccggtgcctgggaacaggtcctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgccggctgtggcaatccac
ggtaacaagagccagaacgcccgcaccaaggccctcgccgacttcaaggccggcgaagtg
cgcatcctggtggccaccgacatcgcggcccgtggcctggacatcgaccagttgcctcac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgggccggtcgttcgggcgaagcgatctcgttggtcgcaccggacgaagaaaagctg
ctcaaaagcatcgagcgcatgaccaagcagaaaattgccgacggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaagtgcgcgaacgtccggacgtgcgcaat
ccgcgcaatgcccgtggcccacgcggcgacggtccgaatggcggcggtggtggcggtggc
cgcaaggacaaaggcaaggacaagggcaaggaaaaaccggccagcaatagcaatggccgt
ggcgaacgcccagcccgcgagcagaagcctcgcgaaggcacgccagctcgtgaacagcag
cgtccagccccacgcgccgcagccgatcgtgccccggacgagttcctggacgacgatatc
gataacttcggtaaccgcgtcgactacgtgccacagcagaaaccggcccagggccgtggt
cgccgcccgggtgccccggcacagggtgcagctgcaggcgcgccgcgcagcggccagcca
caaggtcgccagaatgggccgcgcaacagcaacggctcgtccaccggtacgccaccggcc
aagcgcagcggcccacgcaacggtgccccgcgtgacggtcaggcccgtcgcgacgacacc
cgcccgcgccgtccggcccgtgacgaccagcctcgccaggaacccgccgtgcagaacccg
cgcagcaaccagccgaagatcgtgcacaaggaatcgaaagccgatcgcttcccgacgcct
gaacagctggatcaactgccaagccgcccacggggcgaaaaaccggcattgctgacacgc
aatcgctga
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