Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a5350
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Entry
PSEBR_a5350 CDS
T01472
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSEBR_a5350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a5350
Enzymes [BR:
pba01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PSEBR_a5350
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PSEBR_a5350
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PSEBR_a5350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AEA71853
UniProt:
F2K6C6
LinkDB
All DBs
Position
complement(6470639..6471451)
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRIVQVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELESGLALRYTDPRRFGAMLWSLD
PFNHELLIRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRRAAGGISRARYLKLAIEIKRILAHAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGELCKVCGTGLREIRLGQRASVWCPRCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgccggaagtcgaaaccacccgtcgcggaatcgcgccccatcttgaaggc
cagcgggtcagccgcgtggtggtccgcgaccgccgcctgcgctggccgatcccggaagat
ctcgacgtgcggctttcgggccagcgcatcgtgcaggtggagcggcgggccaagtacctg
ttgatcaatgccgaggtcggcacgttgatcagccacctgggcatgtccggcaatctgcgc
ttggtggaggtcggcatgccggccgccaagcacgagcacgtggacatcgagctggaatcc
ggcctggccttgcgctacaccgaccctcggcgctttggcgcgatgctctggagccttgac
ccgttcaatcacgagctgttgattcgcctgggtcccgagccgttgaccgacctgttcgat
ggcgaacggttgttccagctttcgcgagggcgttccatggcggtcaagccgttcatcatg
gacaacgcggtggtggtgggggtgggcaatatctacgcgaccgaggccctgttcgccgcc
gggatcgacccacgccgggccgccggaggcatttcccgggcgcgttacctgaagctggcg
atcgagatcaagcgcatcctcgcccatgccatcgagcgcggtggcaccacgctgcgggac
tttatcggcggggacggccaacctggctatttccagcaggaactgttcgtctacggacgg
ggcggggagctgtgcaaagtctgtggcacggggctgcgggaaatccgcctgggccagcgt
gcgagcgtctggtgtccacgctgtcagagctga
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