Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a548
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Entry
PSEBR_a548 CDS
T01472
Name
(GenBank) Exoribonuclease II (Ribonuclease R)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEBR_a548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pba03019
]
PSEBR_a548
03016 Transfer RNA biogenesis [BR:
pba03016
]
PSEBR_a548
Enzymes [BR:
pba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSEBR_a548
Messenger RNA biogenesis [BR:
pba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSEBR_a548
Transfer RNA biogenesis [BR:
pba03016
]
Prokaryotic type
tRNA degradation factors
PSEBR_a548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AEA66696
UniProt:
F2KBJ4
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All DBs
Position
684793..687429
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AA seq
878 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKTLRTEYAGVVP
HLKQLYSLYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMSDKPAEAPTGRKKRGNETAAPATKGKGKGAPAK
TAEPEPARAGRRSSVKDKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGK
SHGAEKPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcgggggtcgcctgctagc
cgcgagcagttggtcgaagagttcggtctgaccaccgaggaccaactcgaagccctgcgc
cgccgtctgcgcgccatggagcgcgacgctcaactgatctacacccggcgcggcacctat
gcgccggtggacaagctcgacctgatcctgggccgcatcgccggtcaccgtgacggcttc
ggtttcctgatcccggacgacggcagcgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgacggtgaccgggccctggcccgtgtttccggcctggaccgtcgtggtcgc
cgtgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgagtccatcgtcggccgttac
ttcgaagaaggcggtatcggttttgttgtgccggataacccgaaggtccagcaggaagtg
ctgattaccccgggccgtaatggcgccgccaaggtgggtcagttcgtcgaggtgaaaatc
acccactggccaactgcgcgcttccagccacagggcgatatcgttgaagtggtcggcaac
tacatggcgccgggcatggagatcgacgtcgcgctgcgcacctacgacatccctcacgtc
tggcccgaggctgtgctcaaggaagccgccaagctcaagccggaagttgaagagaaagat
aaagaaaaacgcatcgacctgcgccatctgccgttcgtcaccatcgacggcgaagatgcc
cgcgacttcgacgatgcggtctactgcgaagccaagcctggcaagctgcgcctgttctcc
ggcggctggaagttgttcgtcgcgattgccgacgtgtccagctacgtgaagatcggttcg
gccctggataacgaagcccaggtgcgcggcaactccgtgtatttccctgagcgcgtgatc
ccgatgctgcctgagcagctgtccaacgggctgtgctcgctgaatccgaaagtcgaccgt
ttggccatggtgtgcgagatgaccatctccaagaccggcgaaatgaccgactaccagttc
tacgaagcggtgatccactcccaggcgcgcctgacctacaacaaggtcagcaccatcctg
gaaacgccgaagaccagtgaagccaagaccctgcgtaccgaatacgctggcgtggtgccg
catctcaagcagctgtactcgctgtacaaggtattgctgggtgcccgtcacgtgcgtggc
gcaatcgatttcgaaacccaggaaacccggattgtcttcggttccgagcgcaagatcgcc
gcaatcaccccgacgacccgtaacgatgcgcacaagctgatcgaagagtgcatgctggcg
gccaacgtagccaccgcggaattcctcaagaagcacgagattcctgcgttgtaccgcgtg
cacgacggcccgccgccggagcgtctggaaaagctgcgcgccttcctcggcgagctcggc
ctgtccctgcacaaaggcaaggacggcccgacgccgaaggactaccaggcactgctggcc
agcatcaaggaccgtccggattaccatgtgatccagaccgtgatgctgcgctccctgagc
caggcggtttacagcgccgacaatcagggccactttggcctgaattacgaagcgtacacc
cacttcacctcgccgatccgccgttacccggacctgctcacgcaccgcgcgatccgcagc
gtgatccattccaagcagaacaccccgcacgtcaagcgcgccggtgccatgaccattccg
aaggcacggatctatccgtacgacgaagcggccctggaacagttgggcgagcagtgctcc
atgagcgagcgccgcgccgacgaagccactcgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgcgtgggcgagtcgttcccaggcgtgatcactgcagtgacaggcttt
ggtttgtttgtcgagctgaccgacatctacgtcgagggcttggtgcacgtcaccgccttg
ccgggtgattactaccacttcgatcctgtgcaccaccgcctggcgggcgagcgcaccggt
cgcagcttccgtctgggcgacaccgtggaagtgcaggtcatgcgcgtcgacctcgatgag
cgcaagatcgacttcggaatgtctgacaagcccgccgaagcaccgactggccgtaaaaag
cgtggcaacgagaccgcagcgcctgcgaccaaaggtaagggtaaaggtgctcctgcaaaa
accgcggagcctgagccagccagggccggtcgccgttcgtctgtcaaggacaaggctccc
gaggcctaccgccccagcgacgctgcggcgaaaaacgccgaactgcgcaagagccgcgag
ttgaagcagcagttgctcaacgaagccaaaagcggtggtaaagcggcgtctgggggaaag
tcccacggggcggaaaaaccgtcgagcaagccaagtaaacaccgtaaaggcccgccaaaa
gcgggttcggcccccgcgaaaagcggcgggtcgcgcaaacctaaggccaagtcatga
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