Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a683
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Entry
PSEBR_a683 CDS
T01472
Name
(GenBank) Exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSEBR_a683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a683
Enzymes [BR:
pba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSEBR_a683
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSEBR_a683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
AAA_12
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEA66831
UniProt:
F2KBP9
LinkDB
All DBs
Position
853478..857167
Genome browser
AA seq
1229 aa
AA seq
DB search
MSRQTPLALAFPLHGSQLIEASAGTGKTFTISALYLRLVLGHGGSASGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDEIPAPDSLIVALRDEFNADQWPGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSELLGEVLRDYWRLFCYSMQGE
ALSWVRTHWGGPAALLPRVRGLFSSERGDGDGLEPAELIAAALQERSAALLDLKAPWRQW
AVELLQICQQGVASKSVDGRKMQARYFEPWFQKITAWVDDESLELLDIGTGFSRLTPEGM
AEAWKGDVPNHPGLDAMASLKASLDALPTPDAAVLQHAAQWVGARFEAEKRRRAEMGFDD
MLLRLDAALQADGGERLASLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNDPGTGLF
LIGDPKQAIYAFRGADIYTYLRAREATAGRLHTLGTNFRSSHAMVGAVNHVFQNAESRPK
GRGAFLFREPSGENPVPFLSVESQGRKESLRVAGQVVAALNIWHLSSEQPLSGAVYRQSM
AAACASEITALLNGGQSGRDGFTVDGKVLRGVRPADIAILVRDGKEAQAVRDALSARGVR
SVYLSDKDSVFASQEARDLLVWLKACAEPDAERPLRAALASITLNLSLTELERLNQDELA
WEARVMQFRGYRTVWRSQGVLPMLRRLLHDFELPQALMVRSDGERVLTNLLHLCELLQQA
AGELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSTKPVDGSRLPLHYHDEANKAQISLKPTAELIAKADDERLAEDLRLLYVALTRAQHACW
LGVADLKRGSNNRSILHVSALGYLLGGGAPLTESVELRRWLEDLQQGSDAVSYQPMPEAT
DEHYRPPRNEAVLLEPLVPLRKASENWWIASYSALRISESLSEGSDTAPESPQAQKLFDD
ERLDPDAPRETIAIGGDIHRFPRGPNPGTFLHGLLEWAAGEGFSSAPADIEDAIARRCNR
RGWKGWITTLSDWLQHLIKMPMHVGNDQAPVVLEDLSQFQVEMEFWFASHKVDVQKLDQL
VCRFSHGGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGVDDMAYTVPAME
QSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTRSASQGVYFAKPP
RALIEQLDRLFQGAPEPKAEPAWVQGELL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgacagacaccattggccttggctttcccgctacatggtagccaactgatcgag
gccagcgccggtaccggcaagaccttcaccatctcggcgttgtacctgcgtctggtgctg
gggcatggcggttcggcgtccggctttggccgcgagttgcttccaccgcaaatcctggta
gtgaccttcacggacgctgccaccaaagagttgcgtgaacgaattcgcacccgtctggcc
gaagccgcacgcttcttccgtgacgaaattcccgccccggattcgctgatcgttgcgttg
cgcgacgagttcaacgccgaccaatggcctggctgcgcgaaccggctggacatcgctgcg
cagtggatggacgaagcggccgtctcgaccatccacagttggtgccagcgcatgttgcgt
gagcacgccttcgacagcggtagcttgttcacccagaccctggaaaccgaccacagcgaa
ttgctgggcgaggtgctgcgcgattattggcggttgttctgctattcgatgcaaggcgag
gcgctgagctgggtgcgtacccattggggagggcctgctgcgctgttgccgcgggtacga
ggcttgttttccagcgagcgtggcgatggtgacgggcttgagcctgccgaactcatcgcc
gcggccttgcaggagcgcagtgccgccttgctcgatctcaaggcgccgtggcggcaatgg
gcggtggaactgttgcagatatgccagcaaggcgtggccagcaagtctgtcgacgggcgc
aagatgcaggcgcgttacttcgaaccgtggtttcagaaaatcactgcctgggtcgatgac
gaaagccttgagctgttggacatcggcaccgggttctcgcggttgacgcccgagggcatg
gccgaagcctggaaaggtgacgtgcccaaccatcccgggctggacgccatggccagtctc
aaggccagcctggatgcgttgcccacgccagatgccgccgtattgcagcatgccgcgcaa
tgggtcggggcgcgcttcgaggcagagaagcgtcgccgcgccgagatgggcttcgatgac
atgctgctgcgcctcgacgcggccctgcaggccgacggaggcgagcgtctggcgagcctg
atccgcgagcagtttccggtagcgctgatcgatgagttccaggacaccgacccggttcaa
taccggatcttcgaaagcatctaccgtatcgaagataacgaccccgggaccggacttttc
ctgatcggcgatccgaagcaggcgatctacgcgtttcgcggtgccgacatctatacctac
ctgcgcgctcgcgaagccactgctggcaggctgcacacgctgggcacgaatttccgttcc
agccatgccatggtcggtgcggtaaaccatgttttccagaatgccgagtcccgcccgaag
gggcgtggggcctttctgttccgtgaaccttcgggcgagaacccggtgccgttcctgtcc
gttgaatcccagggacgcaaggagtccttgcgggtcgcagggcaggtggtcgcggcgctg
aacatctggcacctgtcgtcggagcagccgctttccggtgcggtgtatcgacaatccatg
gcggccgcttgcgccagtgagatcacggcgttgctcaacggcggccagtcaggacgcgat
ggcttcacggtcgatggaaaagtgctgcgaggcgtgcgcccggcagatatcgccatcctg
gtgcgcgatggtaaagaagcgcaggcggtgcgagacgcgttgtccgcgcgaggcgtgcgc
agtgtctatctgtccgacaaggattcggtctttgcctcgcaggaagcgcgtgatttgctt
gtctggctcaaggcctgtgccgagccggatgccgaacgaccgctacgggcggctctggcc
agcatcacgttgaatctgtcgctgacggaactggagcgtctcaatcaggatgagctggcc
tgggaagcccgggtcatgcaattccgcggttatcgtacggtctggcgcagccagggcgtg
ctgccgatgttgcggcgcctgctgcatgatttcgaactgccccaggccttgatggtgcgc
agcgatggcgagcgggtgctgaccaacttgttgcacctttgcgaactgttgcagcaggca
gccggtgaactggatggcgaacaagccttgatccggcatttgtccgagcacctggccttg
tccgggcaggcgggagaagagcagatcctgcgcctggaaagcgatgagcaactggtcaag
gtggtcacgatccacaagtccaagggcctcgaatatccgttggtcttcttgcccttcatc
tgctcgacgaaaccggtggacggcagtcgactgccattgcactaccacgatgaggccaac
aaggcgcagatcagcctcaagcccactgccgaattgatcgccaaggccgatgacgagcgt
ctggctgaggatctgcggcttctctacgtggctctgacccgtgcacaacatgcctgctgg
ctaggtgtcgcggatctcaagcggggcagcaacaatcgctcgatcctccatgtgtccgcg
ctggggtatctattgggcggtggtgcaccgctgaccgagtcggtggagttgaggcgttgg
ctggaagacctgcaacaaggcagcgacgcggtgagctaccagccaatgcccgaagccacc
gacgagcactaccggcccccgcgcaacgaagccgtgttgcttgagcccttggtgcccttg
cgaaaagccagcgagaactggtggatcgcgtcctacagtgccttacgcatcagcgaaagc
ctgagcgaaggcagcgataccgcgccagagagtccgcaggcccagaaactgttcgacgat
gaacgactggatccggacgctcccagggagactatcgctatcggtggcgacatccaccgc
tttccccgtggccccaaccccggcactttcctgcatggtctgctggagtgggccgcaggg
gagggcttttcatcggcgccagcggatatcgaggatgccattgcccgacgctgcaatcgc
cgaggctggaaaggctggatcaccacgctgagcgattggctgcagcacctgatcaagatg
cccatgcacgtcggcaacgaccaggcgccagtggtgctcgaagacctgagccaattccag
gtcgaaatggagttctggttcgccagccacaaggtcgatgtgcaaaagctcgaccagctg
gtttgccggttctcccatggcggtgtggcccgagttgcagcggagccggtgctgctcaat
ggcatgttcaagggcttcatcgatttgacgttcgagcacgacggtcggtactacgtggcc
gattacaaatccaactggctgggtgtcgatgacatggcctacaccgtaccggccatggaa
cagtcgattctggaccatcgctacgacctgcaatacgtgctgtacctgttggccctgcat
cgccagctcaaggcacggctccccgattacgactacgaccggcatgtcggcggcgcgttg
tacctgttccttcgcggaacccgctcagccagtcagggtgtgtatttcgccaagccgcca
cgggcattgatcgaacaattggatcgtctgttccaaggggcgcccgaacccaaggccgag
ccggcgtgggtacagggagaattgctatga
DBGET
integrated database retrieval system
