Pseudomonas bambusae: AAEO81_02395
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Entry
AAEO81_02395 CDS
T11347
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbab Pseudomonas bambusae
Pathway
pbab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAEO81_02395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbab03019
]
AAEO81_02395
Enzymes [BR:
pbab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAEO81_02395
Messenger RNA biogenesis [BR:
pbab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAEO81_02395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WZO62136
LinkDB
All DBs
Position
complement(530075..531994)
Genome browser
AA seq
639 aa
AA seq
DB search
MSFASLGLSEALVSAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYAKNLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSADITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGTV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRTGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDINAVEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAAAAASGERPARPARQQKPRQGTPSNEARSAQQPPAPRADRAPDEFL
DDEVDNFGNRADYVSPYQGKNQQGRNRRPGAPATGAAPAARGQAPGRSGPRSGSGGGAST
GAAAGAGAPAKRSGPRNGSGRDGQARREDQPRNRRPARDDQQPARQEPAVRGPRDGQPGP
KIMHKESKSDRFPSAELLDQLPSRPRGEKPALLTRNREG
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcagcgccatcgaggctgctggc
tatacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggccgcgat
ctgatggtcgccgctcagacaggtactggtaaaaccggcggtttcgccctcccgattctg
gagcgcctcttccccgccggccacccggacaaatcccagcgtcacggcccgcgccaacca
cgcgtactggtcctgaccccaacccgtgaactcgcggcccaagttcacgacagcttcaag
atctacgccaagaacctcaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggcgatggcccgtggcgttgatgtcctcgtcgcctgcccgggtcgcctg
ctggacctggctggccaaggcagcgtcgatctgtcccacgtcgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgttcacgatgtgaagaaagtcctcgcccgc
ttgcctgcaaaacgccagaacctgctgttctcggctaccttctcggccgacatcaccgcc
ctggccggcaagctgctgcataacccggaacgcatcgaagtcacgccgccgaacactacg
gtcgagcgtatcgaacaacgcgttttccgcctgcccgccaaccataagcgttcgctgctg
gcgcacctgatcactcagggtgcgtgggaacaggtactggtgttcacccgtaccaagcac
ggcgccaaccgtctggccgagtacctggacaaacacggcttgagcgctgtggcgattcac
ggcaacaagagccagaacgcccgcaccaaagcgctggccgatttcaaggccggcaccgtg
cgcatcatggttgccactgacatcgcggcacggggtctggacatcgaccaactgcctcac
gtggtcaacttcgaactgccgaacgtcgacgaagactacgtgcaccgcattggccgtacc
ggtcgtgcaggccgtaccggtgaggcgatctctctcgtggcgccggacgaagagaagctg
ctgaaaagcatcgagcgcatgaccaagcagaagatcgccgacggtgatctgatgggcttc
gacatcaacgccgtcgaggccgagaagccagaagttcgcgagcgtccggacgtgcgcaac
ccgcgcaacgctcgtggcccgcgtggcgacggtccgaacggcggcggtggtggtggcggt
cgcaaggacaaaggcaaagacaagggcaaggaaaaaccggcagccgccgcagcctcgggc
gaacgcccggcgcgtccagcccgtcagcaaaagcctcgtcagggcacgccgtccaacgag
gcgcgttcggcacaacagccaccagcccctcgtgcggaccgcgcaccggatgagtttctg
gatgacgaagtcgacaacttcggcaaccgcgctgactacgtgagcccttatcaaggcaag
aaccagcagggccgtaaccgtcgtcctggtgccccggccactggcgcagctccggcagcg
cgtggtcaggcaccgggccgtagcggccctcgcagtggttccggtggcggcgccagcaca
ggtgccgccgcaggtgcaggcgcgcctgccaagcgcagtggcccgcgcaacggttccggt
cgtgatggccaggcccgtcgcgaagaccaaccacgcaaccgtcgtccggctcgcgacgat
caacagcctgctcgtcaggagccggccgttcgtggtcctcgtgacggccagcccggcccg
aagatcatgcacaaagagtccaagagcgaccgtttcccgtccgccgagctgctcgaccag
ttgccgagccgcccacggggtgagaaacccgccctgctgacccgcaaccgcgaaggttaa
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