Pseudomonas bambusae: AAEO81_04380
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Entry
AAEO81_04380 CDS
T11347
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbab Pseudomonas bambusae
Pathway
pbab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAEO81_04380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbab03019
]
AAEO81_04380
Enzymes [BR:
pbab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAEO81_04380
Messenger RNA biogenesis [BR:
pbab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAEO81_04380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WZO62501
LinkDB
All DBs
Position
942360..943691
Genome browser
AA seq
443 aa
AA seq
DB search
MTFASLGLIEPLLRALDALGYQTPTPVQAKAIPPVLEGRDLMAAAQTGTGKTAGFALPLL
QRLTMEGPKVAANSVRALVLVPTRELAEQVHEAIRQYGEHLPLATYAVYGGVSINPQMMK
LRRGVDVLVATPGRLLDLYRQNAVKFSQVQTLILDEADRMLDLGFSEELRDIYAALPKRR
QTLLFSATFSDSIRALAGQMLDNPLSIEVSPRNVAASSVKQWVVTVDKKRKSELFIHLLK
KQRWSQVLVFAKTRVGVDQLVDRLQGLSINADGIHGDKPQATRQRALDRFKAGEVQILVA
TDVAARGLDIDDLPTVVNLDLPIVAEDYVHRIGRTGRAGQTGEAISLVCADEVELLSAIE
VLTRQTLQRREEPDFIPEHRVPATDATGQILKKPKKPKKPKVSGSKRNLGKWVDSGEVAA
DVPAAKPVRKVPVFNTGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgcttctctcggcctgatcgaacccctgctgcgcgcgcttgatgcgcttggc
taccagacgcctactcctgttcaggccaaggctattcctcccgtgttggagggccgtgat
ctgatggcggccgcgcagaccggcactggcaagaccgcaggtttcgctctgccgttgttg
caacgtctgacaatggaaggcccgaaagtggcggccaactcggtgcgggcattggtgctg
gtgccgactcgcgagctggcagagcaggtgcatgaagcgattcgccaatatggggaacac
cttccgctggccacctatgcggtttatggcggcgtgagcattaatccgcaaatgatgaag
ttgcgtcgcggtgtcgatgtgctggtggccacgccgggtcgtttgctcgatttgtaccgt
caaaatgcagtgaagttttctcaggttcagacgctgatcctcgacgaagccgatcgcatg
ctcgacctgggcttttcggaagagctgcgcgatatctacgccgcgctgccgaagcgtcgc
cagacgttgctgttttccgcgacgttctccgattcgatccgcgcgctggcggggcagatg
ctcgataacccgctgagcattgaggtcagcccgcgcaacgttgcggcttcgtcggtcaag
cagtgggtggtgacggtcgacaagaagcgcaagagcgagctgttcattcatctgttgaaa
aagcagcgctggagtcaggtgctggtattcgccaagacccgcgtcggtgtggaccagttg
gtggatcgcctgcagggcctgagcatcaacgccgacggcattcatggcgacaagccgcag
gcgacccgtcagcgggcgctggatcgtttcaaagcgggggaagtgcagattctggtggcc
actgatgtggcggctcgcggtctcgacatcgatgatctaccgactgtggttaacctcgac
ctgccgatcgtcgcggaggattacgtgcaccgcatcggtcgcacggggcgtgccgggcag
acgggggaagcgatttcgctggtgtgcgcggacgaagtcgagctgctcagcgccattgaa
gtgctgacgcgccagaccctgcaacgccgcgaagagccggattttattcctgaacaccgc
gttcccgcgacggatgccaccgggcagatcctgaaaaagccgaagaagccgaagaaacca
aaagtcagtggcagcaagcgcaatctgggcaaatgggtcgatagcggcgaagtggctgcc
gacgtgcccgctgcaaagcccgtgcgaaaggtgccggtcttcaataccggtccgaggaag
cgcaaaccctga
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