Pseudomonas bambusae: AAEO81_09885
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Entry
AAEO81_09885 CDS
T11347
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbab Pseudomonas bambusae
Pathway
pbab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAEO81_09885 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbab03019
]
AAEO81_09885 (rne)
03009 Ribosome biogenesis [BR:
pbab03009
]
AAEO81_09885 (rne)
Enzymes [BR:
pbab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AAEO81_09885 (rne)
Messenger RNA biogenesis [BR:
pbab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAEO81_09885 (rne)
Ribosome biogenesis [BR:
pbab03009
]
Prokaryotic type
rRNA processing factors
AAEO81_09885 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WZO63502
LinkDB
All DBs
Position
complement(2121231..2124476)
Genome browser
AA seq
1081 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKSPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RESLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDSPEAHSLQSSYEIAAAAAEVEEVQPTAATRTLVRQEAAVKTAPARANAPMPT
EVAAPVAPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPAAVVEKPAAERPARNEERRNGR
QQSRSRNGRRDEERKPREERAPRAEREERAPREERAPREERAPREERAPREAREDSAPRE
ERAPRAPREERQPRAPREDRKPREERVRELREPLDAAPAVNVPREERPERAPREERQPRP
PREERKPREEQTAAAEDETLLNNEEQQDDNQEHAEGDRPRRRSRGQRRRSNRRERQRDAN
GNVIEGSEGNEGEENADEASNEGVRREGNRAEIAAGLAVTAAVAETAISAHAEADAHRQA
ERATAAVETPAVEAAPVEKTDVVEAPAVEAPAVETQASTAKRSIMPEVEVAQFDASLSPF
ERQVKAAAEQVDPPVVAEAPAVVEAPAPAPVAEVQAPVETPKAVEPVVEKPAVEAPAVEA
PVAAAPVAPAPVVEAPAQTAAPEIVAAPVAAEPAPVAAEKPALPQASTGRAPNDPREVRR
RRLEAERLQKEAEANAAAAPQVAEPAPVEAAAPAVEHVASTQEAVTEHAEAEESKEPKPL
S
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacctgaagagttgcgtgttgcgctggtagac
ggccagcgcctatacgacctggacatcgaatccggggcccgcgaacagaagaaggccaac
atctataaaggccggatcacgcgtatcgaaccgagccttgaagcggccttcgtcgacttc
ggctccgagcgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaag
tccccggaaggtcgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgagaaagaagagcgtggcaacaagggcgcagccctgaccactttcatcagcctg
gccggtcgctatctggtactgatgccgaacaacccacgcgccggtggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctggtcgcccctgcc
gacatgggcctgatcgttcgtactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgccatcaaggaagcgtccctggatcgcgcc
gcgccgttcctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtcctgatcgacagcgtcgaagcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtc
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtggtc
gaactgccttccggtggctccatcgtcatcgatcccaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagcggctgaggaaatcgcccgtcaactgcgtctgcgcgacatcggcggcctgatc
gtcatcgatttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaagtc
cgcgaaagcctggaagccgaccgcgcccgcgttcaagtgggccgtatctcgcggttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatctctgggcgagagcagcggcatcgtt
tgcccgcgctgcaacggcaccggcatcatccgcgatgttgaatcgctgtcgctggcgatt
ctgcgcctgatcgaagaagaagccctgaaagaccgcactgccgaagtgcgcgctcaggta
ccgatcccggtcgccgcattcctgctcaacgaaaaacgcaactccatcaccaagatcgaa
ctgcgcacccgcgcccgcatcatcattctgccgaacgatcatctcgaaacgccgcacttc
gaagtgcaacgtctgcgtgatgacagcccggaagcccacagcctgcagtccagctacgag
atcgccgcggccgctgctgaagtggaagaagtgcagcctaccgccgcgacccgcaccctg
gttcgccaggaagctgcggtcaagaccgcaccggctcgcgcaaacgcgcctatgccgacc
gaagtcgccgcaccggtcgcgccggcaccggtcgctcacgagccaagcctgttcaaaggc
ctggtgaaatccctggtcagcctgttcgcgaccaaggaagagccggttgccccagccgcc
gtggttgaaaagccagctgctgaacgccctgcccgcaacgaagagcgtcgcaacggtcgt
cagcagagccgcagccgtaacggtcgtcgcgacgaagaacgcaagccgcgtgaagaacgt
gcaccgcgtgccgagcgtgaagaacgtgcgcctcgcgaagaacgtgctccacgtgaagaa
cgcgcaccgcgtgaagaacgcgcccctcgcgaagcccgtgaagacagcgctccacgtgaa
gaacgcgcaccgcgtgctccgcgcgaagaacgtcagccacgtgctccgcgtgaagaccgc
aagcctcgtgaagagcgcgtgcgtgaactgcgcgagcctctggatgctgccccggccgtc
aacgtgcctcgcgaagaacgtcctgagcgcgcaccgcgtgaagagcgtcagccgcgtccg
ccgcgcgaagaacgcaagccgcgtgaagagcagaccgctgctgccgaagacgaaaccttg
ctgaacaatgaagagcagcaggacgacaatcaggaacacgccgaaggcgatcgtcctcgt
cgtcgctcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgccaacgtgatgccaac
ggcaatgtgatcgaaggttcggaaggcaacgaaggcgaagaaaacgctgacgaagcctcg
aacgaaggcgttcgtcgcgaaggtaaccgtgcagaaatcgctgcaggtctggcagtgact
gctgccgtcgcggaaaccgcgatcagcgcgcacgccgaagccgacgcacaccgccaggct
gagcgtgcaaccgctgccgttgaaaccccggctgttgaagcggctccggtcgagaaaacc
gacgtcgtcgaagcacctgccgttgaagcgcctgccgttgaaacacaggcgtcgaccgcc
aagcgttcgatcatgccggaagtggaagtggctcagttcgatgcgtccctcagcccattc
gaacgtcaggtcaaagcggcagccgaacaggtcgatccacctgtcgtagccgaagcgcct
gcggtcgttgaagcgccggctcctgcgcctgtcgcagaagtgcaggcaccggttgaaacg
ccgaaagctgttgagccggtcgtagagaagcctgctgttgaagcgcccgctgtcgaggct
cccgtagccgcggcgcctgtcgcgccagcaccggttgttgaagcaccagcccaaaccgcc
gcgccggaaatcgttgccgcccctgttgctgccgagccagcgccagttgcagccgagaag
ccagcactgccgcaagccagcacgggtcgcgcaccgaacgatcctcgcgaagttcgccgt
cgtcgtctggaagccgagcgtctgcaaaaggaagccgaggctaacgccgctgctgccccg
caagtcgcagagcccgcacctgtcgaagcggctgctccagccgtcgagcacgtagcctcc
actcaggaagccgtgaccgagcacgctgaagccgaagaaagcaaagagcctaaaccgctc
tcgtaa
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