Pseudomonas bambusae: AAEO81_24650
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Entry
AAEO81_24650 CDS
T11347
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbab Pseudomonas bambusae
Pathway
pbab03030
DNA replication
pbab03430
Mismatch repair
pbab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAEO81_24650 (dnaE)
03430 Mismatch repair
AAEO81_24650 (dnaE)
03440 Homologous recombination
AAEO81_24650 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbab03032
]
AAEO81_24650 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbab03400
]
AAEO81_24650 (dnaE)
Enzymes [BR:
pbab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AAEO81_24650 (dnaE)
DNA replication proteins [BR:
pbab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AAEO81_24650 (dnaE)
DNA repair and recombination proteins [BR:
pbab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AAEO81_24650 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
WZO60679
LinkDB
All DBs
Position
complement(5445224..5448745)
Genome browser
AA seq
1173 aa
AA seq
DB search
MSASFVHLRMHTEYSLVDGLVRVKPLVKALTGLSMPAVAVTDQNNLCSLVKFYKAAMGAG
IKPICGADIWLAGRDKDAPLSRLSLLVMNPKGYLNLTELISRGFMHGQRNGVVIIEREWV
AEAHEGLIALSAAKEGEIGMALLGGNPAEADELLKEWVSVFPDRFYIEIQRTNRVNDEEH
LHAAVALADRHGVPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSHNYSDQQYLK
SAAEMAELFSDLPDALQNTVEIAQRCNIEVRLGKHFLPNFPIPDGLTIDEYFRKVSFEGL
EERLAVLWPRETTPNYEAKRQEYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKTDEEGAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFAAIYCDEEGGGLV
TQYDKDDVEAAGLVKFDFLGLRTLTIIDWAMKTINRDRAKVGEDPLDIAFIPLDDAPTYD
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHVDYQYEGLKPVLLPTYGIILYQEQVMQIAQVMAGYTLGEADMLRRAMGKKKPE
EMAKQRGGFIEGCKTNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKKHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNNSEFKFTVNDEGRIVYGLGAI
KGVGEGPVEAITEARQAGPFKDLFDFCARIDLKRVNKRTLGGLISSGALDRLGPFFYDDP
KQYQANIDRNRGVLLASLEGAIQSAEQTARSHDSGHADLFGGLFVEPDADVYANHRGAKE
VTLKERLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIVDLKPARDTQTVAGLIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADSFQAAQSLLQTDAMVVVEGEVSSDDFSGGLRLR
AKRVMSLEEARTGLAESLRLTVRSEALKGDRLRWLGDLCKKHRGACPITLDYTGQEARAL
LQFGEAWRIDPADSLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcttctttcgttcatctgcgcatgcacaccgaatattctctggtcgacgggctg
gtgcgggtaaagccgctggtcaaggcgttgaccggcctgagcatgcctgcggtggcagtg
accgatcagaacaacctgtgctcgctggtcaagttctacaaggccgccatgggcgctggc
atcaagccgatctgcggcgccgacatctggttggcaggtcgtgacaaggatgcgcccctc
agccgcttgagcctgttggtgatgaaccccaagggctacctgaatctcaccgagctgatt
tcccgcggtttcatgcatggtcagcgcaacggcgtggtgatcatcgagcgcgagtgggtc
gctgaggcccatgaagggctgattgcgctgtcggcggccaaggaaggtgagatcggcatg
gcgctgctcggcggcaacccggccgaggcagacgagttgctcaaggagtgggtgtcggtc
tttccggatcgtttctacatcgagattcaacggaccaaccgcgtcaatgacgaagagcac
ctgcacgctgccgtcgcccttgccgatcgccacggtgtgccgctggtggcgaccaacgat
gttcgcttcatcaagcaggaagatttcgaagcccacgaaacccgcgtgtgtatcggcgaa
ggccgggcgctggacgatccgcgccgctcgcacaactatagcgatcagcaatacctcaaa
agcgccgcagaaatggccgagcttttcagcgacctgcccgacgcgctgcagaacaccgtg
gaaatcgcccagcgttgcaatatcgaggtgcggttgggcaagcacttcttgcccaacttc
ccgattccagacggcctgaccatcgacgaatacttccgcaaggtgtctttcgaaggcctt
gaagagcgcttggccgtgctgtggccgagggaaaccacacccaactacgaagccaagcgg
caggagtacgtcgaccggttgaatttcgagctggatatcatcatccagatggggttcccc
ggttacttcctgatcgttatggactttatccagtgggccaagaacaacggcgtgccggtc
ggcccgggccgtgggtcgggtgccggctcgctggtggcttacgtacagaagatcaccgac
ctcgatccgctggaatatgacctgctcttcgaacgttttcttaaccctgaacgggtttcg
atgccggacttcgacgtcgacttctgcatggacgggcgcgaccgggtgatcgaatacgtg
gccgagaaatacggccgcaacgcggtgagccagatcattacgttcggctcgatggcggcg
aaggcggtggtgcgggacgtggcgcgggctcaggggaaatccttcggtctggcggatcgc
ctgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaggcctatgagcaggaa
gaaatcctgcgggacttcctcaagaccgacgaggaaggggctgaaatctgggaaatggcg
cgcaagctcgaaggcgttgtgcgtaacgtcggcaagcacgccggtggtgtggtcatcgcg
ccgaccaaactgaccgacttcgcggcgatctattgtgatgaggaaggcggcggcctggtc
acccagtacgacaaggacgatgtcgaggccgcgggtctggtgaagttcgacttcttgggt
ctgcgaacgctgacgatcatcgactgggcgatgaaaacgatcaaccgcgaccgcgccaag
gtcggcgaggacccgctcgacatcgccttcatcccgctggatgacgccccgacctacgat
ctgctgcaaaaagccgaaaccacggcggtcttccagcttgaatcccgtggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagaccttatcgcactggtggcactgttc
cgcccgggcccgctgcagtcgggcatggtggacgactttatcaaccgcaagcacggtcgc
gccgagctgtcttacccgcacgtcgattaccagtacgaagggctcaagcccgtgctgctg
ccaacgtacggcatcatcctgtatcaggaacaggtgatgcagattgctcaggtcatggcg
ggttacaccctcggcgaggccgacatgctgcgtcgggccatgggtaagaaaaagcccgag
gagatggccaagcagcgcggcggcttcatcgaaggctgcaagaccaacaatatcgagccg
gatctggccggtaacattttcgacctggtggaaaaattcgccggttacgggtttaacaaa
tcccactctgctgcgtacgggctcgtctcgtaccagacggcgtggctgaagaagcattac
ccggcgccgttcatggcggccgtgctctcggcggacatgcacaacaccgacaaggtggtg
accttgatcgaggaagtgcggaccatgaagctgcgcctcgatgcgccggacgtgaacaac
tccgaattcaaattcaccgtgaatgacgaaggccgcatcgtgtacggcctgggcgcgatc
aaaggcgtgggcgaggggccggtcgaggcgattaccgaagcgcgtcaggccgggccgttc
aaggaccttttcgatttctgcgcgcgcatcgacctcaaacgggtcaacaaacgcacgctg
ggcgggctgatcagcagtggcgcgctggaccggttggggccgtttttctacgacgaccct
aaacagtatcaagccaacatcgaccgcaatcgcggtgtgttgctcgcctcgctggaaggt
gcgattcaatcggccgaacagaccgcgcgcagtcacgacagtggccatgccgatctgttt
ggcgggctgttcgtcgagcccgatgccgatgtttatgcgaaccatcgtggggccaaagag
gtcactctcaaagagcgtttgcgcggagagaaggaaaccctgggcctgtacctgacgggg
cacccgatcgacgagtacgaaggtgagattcgtcgcttcgcccgccagcggatcgttgac
ttgaaaccggcccgggacacccagaccgtcgccggtctgatcatcgccttgcgtgtgatg
aaaaacaaaaagggcgacaagatggggtttatcaccctggatgaccgctctggccgcatc
gaagcgtcgttgttcgcggattctttccaggccgctcagtcgctgttgcagacagacgcg
atggtggtggtggaaggtgaggtcagttccgatgacttctccggtggcctgcgtttgcga
gccaagcgggtgatgagtctcgaagaagcgcggaccggtctggctgagagtttgcgcctg
accgtgcgcagcgaggcgctgaaaggcgatcgtctacgctggctgggcgacctgtgcaag
aagcaccggggagcgtgcccgatcacgctcgactacaccgggcaggaggcccgggcgcta
ttacagtttggcgaagcgtggcgaatcgatcccgcagacagcctgattcaggcgctgcgt
gaccagttcggacgagagaacgtcttcctgcagtatcgataa
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