Pseudomonas bambusae: AAEO81_26055
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Entry
AAEO81_26055 CDS
T11347
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pbab Pseudomonas bambusae
Pathway
pbab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AAEO81_26055 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbab03400
]
AAEO81_26055 (recD)
Enzymes [BR:
pbab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AAEO81_26055 (recD)
DNA repair and recombination proteins [BR:
pbab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AAEO81_26055 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
AAA_16
AAA_28
AAA_17
TraI_hel_assoc_N
NTPase_1
nSTAND3
PhoH
AAA_5
T2SSE
AAA_25
Mg_chelatase
AAA_24
Motif
Other DBs
NCBI-ProteinID:
WZO60939
LinkDB
All DBs
Position
complement(5769401..5771488)
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AA seq
695 aa
AA seq
DB search
MNRTFAHLLPTPLDAESLAALKPLSRVDDLLLLLERWVERGWLRALDKAFVGFLADLDPA
ADSLVLLAAALTSHQLGHGHVCLDLYETLKEPDFALSLPPEGDVLQTPMLLPSTLLKALD
GATWCQALADSPLVAKAGDSSTTAGQKPLVLSDRRLYLRRYWTYERRIDAALHRRLGQTE
PAASDLAQRLDALFGNASTAPDALIDWQKLACAIATRGAFSIITGGPGTGKTTTVVRLLA
LLQSPAVERGKPLRIRLAAPTGKAAARLTESISHQVQSLDVSEDVRQKIPSDVTTVHRLL
GSRPGTRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPHARMVLLGDKDQLASV
EAGAVLGDLCRDAEAGMYSADTQAWLESVSGEDLSKSGLQQGDPQQHALAQQVVMLRHSR
RFVAGSGIGQLAKRVNQQQDQDARALLVNGGYTDLYSLALKGEQDRALSRLLLDGHGGGP
QGYRHYLTLMRSERPQGLTSIEDPRCVEWARKVLNAFDEFQLLCAVRKGPWGVEGLNQRI
TQTLFAADLIESDQQWYEGRPVLMTRNDYGLGLMNGDIGIALRLPEGPVEENRTALRVAF
PRNDGEGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPEALNPVLTKELIYTGI
TRAKNWFSLIEPRQGVFEEALRRKVKRLSGLMLAL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcaccttcgcgcatttgctgcccacgccgctggacgccgagagcctggccgcg
ctaaagcccctgagccgcgtagacgatttgttattgctgctggagcgctgggtcgagcgc
ggctggttgcgagcgctggacaaggccttcgtgggttttttggcagacctcgatccagcg
gccgattcgctggtgctgcttgcggcagcgttgaccagccatcagctcggtcacggtcat
gtctgtctcgatctctacgaaaccctcaaagagcctgattttgcgctgtcgctgccgccc
gaaggcgacgtgctgcaaacgccgatgttgctgccctccacactgctgaaggcgttggac
ggcgcgacctggtgtcaggcgttggcggacagccctcttgtcgcgaaggcgggcgacagc
agcacgacggcaggacagaagccattggtgttgtcggaccgtcgcctgtacctgcggcgg
tattggacgtatgagcgcaggatcgacgccgcgctgcatcgtcgtctcggccaaaccgaa
cccgcggcgagcgacctggcccagcgtctggacgctctgttcgggaacgcaagcactgca
ccggatgcgctgatcgactggcagaaactcgcctgtgccattgccacgcgcggtgcgttc
agcatcatcacgggtggtcccggtacgggcaaaaccaccacggtcgtgcgtcttctggcg
ctgctgcaatcccctgcggtggagcgcggcaaaccgctgcgtattcgactcgcagcgccc
acgggcaaggcagcggcgcgcctgaccgagtccatcagtcatcaggtgcaaagcctcgat
gtatccgaagacgtgcggcagaaaatccccagcgacgtgaccacggtgcaccgcttgctc
ggcagtcggcccggcacgcggcacttccgccaccacgcgggcaacccgttgccactggac
gtgctggtggtggacgaggcgtcgatgattgatctggaaatgatggccaatctgctcgac
gctttgccgccccacgcgcgcatggtgttgttgggtgacaaggatcagctggcgtcggtg
gaagcgggggcagtgttgggcgatctgtgtcgcgatgccgaagcggggatgtacagcgcc
gacacgcaagcgtggcttgagtcggtcagcggcgaggacttgagcaaaagcgggctgcaa
cagggcgacccgcagcaacatgctctggcgcagcaggtggtgatgttgcgtcactcgcgg
cgtttcgtggcgggcagcggcattgggcaactggcgaaacgggtcaatcagcagcaggac
caggacgcccgagcgctgttggtcaacggcggttatacggacctgtattcgttggcgctc
aagggcgagcaggatcgggcgttgtcgcgtttgttgctcgacggccacggcggcggccct
cagggttatcggcattatctgaccctgatgcgcagcgagcggccacaagggctcacgtcg
atcgaagacccgcgttgcgtcgagtgggcgcgcaaggtgctgaacgcgttcgacgaattc
cagctgttgtgtgccgtgcgcaaggggccgtggggcgttgaggggttgaatcagcgcatc
actcagacgctcttcgctgccgacctgatcgagagtgatcagcaatggtacgaaggccgc
cccgtattgatgacccgcaacgattacggactgggtttgatgaacggcgacattggtatc
gcgctccgtttgccggaaggcccggtcgaggaaaaccgcacggcgctgcgcgtggcgttt
ccgcgcaacgatggcgagggcggcgtgcgtttcgtgctgccgagccggctcaatgatgtc
gaaacggtgtacgccatgaccgtgcacaaatcccagggctcggagtttgcgcacacagcg
ttgattctgcccgaagcgctgaacccggtgctgacgaaggagctgatttacaccggcatc
acgcgggcgaaaaactggttcagcctcatagagccgcgacagggcgtgttcgaagaagcg
ctgcggcgcaaggtgaagcggttgagtgggttgatgttggcgttatag
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