Paenibacillus barcinonensis: HUB98_07580
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Entry
HUB98_07580 CDS
T06922
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03022
Basal transcription factors
pbac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HUB98_07580
09124 Replication and repair
03420 Nucleotide excision repair
HUB98_07580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbac03021
]
HUB98_07580
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_07580
Enzymes [BR:
pbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUB98_07580
Transcription machinery [BR:
pbac03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HUB98_07580
DNA repair and recombination proteins [BR:
pbac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HUB98_07580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QKS56216
LinkDB
All DBs
Position
complement(1618611..1620329)
Genome browser
AA seq
572 aa
AA seq
DB search
MKTFNPSGACIVQRDFTVLLETGHSEFEAARAQLCLYAELVKTPSSFHTYRITPLSLWNA
AALGWRSEQVIASLEQVSRWSVPSALTQDVQRIMDQYGKLKLLAEPDHGGMRLVSQDVQL
LDELNAIRSIAAFRMERVNHHELLLSGENRGLLKQELTRLGYPVLDYAGYRKGSELSFGW
CSDAGTSKASTSQEREQEGFALRPYQEKAVNAFTGGEGTGGSGLLVLPCGAGKTVIGIAV
LERLQCECLILTSNTTSVRQWMQEIQNKTTITSEQIGEYSGQKKQVKPVTVATYQILTHR
KSKDADFSHMHLLQERKWGLIIYDEVHLLPAPVFRATADIQATRRLGLTATLVREDGCEQ
DVFSLIGPKLYDMPWKELEQQGWIAEVKCQEVRVPLSPELRSTYVQAEGKHQFRLAAENP
AKLNVVKRLLERHSNAPTIVIGQYLDQLEMIAREIDAPLISGSMSQQERIKWFSAFRQGN
IRTIVVSKVANFAVDLPDAAVALEISGSFGSRQEEAQRLGRILRPKADENKAFFYALVSE
NSKEQEFALHRQMFLVEQGYEYAIVQESDMIQ
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaagacctttaatccgtcaggtgcctgcattgtacagcgggatttcactgtgctgctg
gagacggggcattctgaatttgaagcggcgagagcacagctctgcttatatgccgagtta
gtgaaaacaccttcatccttccacacctaccgtattacgccactgtctctatggaacgcg
gcagcactaggctggaggtcggagcaagtcattgccagtctggagcaggtgtcacgctgg
agtgtgccttctgctcttacgcaggatgtgcagagaatcatggaccagtatggcaaatta
aagttgctcgctgagccggatcatggtggcatgcgcttggttagtcaagatgtgcagctc
ctggatgagttaaatgcgataaggtcgattgcggcatttcgtatggagcgggtaaatcac
catgagcttctgctatcaggggagaatcgtggattgttgaaacaggagctgacccgtctt
ggttatccggtactggattatgcaggttatcggaaaggcagtgagctttcatttggctgg
tgctctgacgcagggacatccaaggcaagtacatcccaggagagagaacaagagggattt
gcgcttcgtccatatcaggaaaaagcggtaaatgcttttacgggtggcgaaggcacgggc
ggcagcgggctgcttgtgctgccctgcggagcaggcaaaacggtcattggcatagccgtg
ttggaacggctgcaatgcgaatgccttattttgacgtctaatacaacatcggttcggcaa
tggatgcaggaaattcaaaataaaacaacgatcacttccgagcagatcggagagtactcc
ggccagaagaaacaggtgaagccggtgacggtggctacatatcagattttgactcaccgc
aagtccaaggatgcggattttagccacatgcacctgttacaggagcgaaaatgggggctg
atcatctatgacgaggtgcatcttctgccggccccggtgttccgcgctacagctgacatt
caggcaacccgccgcttggggctgacggctacacttgtgcgtgaagatggatgtgaacag
gatgtattctcgctgattggtcccaaattatacgatatgccatggaaagagctggagcag
caaggctggattgccgaggtgaagtgtcaggaggttcgggttccgttatcgcctgaatta
agatcgacgtatgtgcaagccgagggcaaacatcaatttcgtcttgcagctgaaaatcct
gccaaattaaatgttgttaaacgcttgcttgaacgtcatagcaatgcaccaacgatcgtt
attggtcaatacctcgaccagcttgagatgattgcccgggaaattgatgcaccactcatc
tcgggctccatgtcacagcaggagcgaatcaagtggttctctgcttttcgtcaggggaat
atacgcactattgttgtgtccaaggttgccaattttgccgtggatttgccggatgctgcg
gttgcgcttgagatttcaggaagctttgggtcaagacaggaagaggctcagcggctcggc
cgcattttgcgtcccaaggcagatgagaataaagcctttttctatgcgcttgtttctgaa
aatagcaaggagcaggaatttgcgttgcatcgccagatgtttctcgttgagcaggggtac
gaatatgcgattgtacaggaatcagatatgattcaataa
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