Paenibacillus barcinonensis: HUB98_12750
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Entry
HUB98_12750 CDS
T06922
Name
(GenBank) collagen binding domain-containing protein
Organism
pbac
Paenibacillus barcinonensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen_bind
SpaA
Gram_pos_anchor
SdrD_B
Big_8
bMG3
DUF11
CarboxypepD_reg
Motif
Other DBs
NCBI-ProteinID:
QKS57099
LinkDB
All DBs
Position
complement(2743295..2747854)
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AA seq
1519 aa
AA seq
DB search
MKKRVSIMLIALLLVTQLLQGLVLTSTVYAQDDTNHMSVGTMNDPSSPSAEEESKLPEHQ
VDNGADATADGKTSLETEETELTATPDKSETASVSPLAAAAVASEIQENLITDVQMYNQK
PEYNGNGQIEVKGDKIEDIRPRISDEVAVVFKWAFENDAHSYGDGSTFTFRLPDKFIIGS
QLRGNLDGGVGEYVVNPDGTIAFTFNEMLEHAQLEGNFYVWLKFDESKMEDGLKQRIDFS
GVGQGPIDVNFANTAKDELQKFGKANKNNFNSDEIEWTVDFNQGEKSMTNVVLEDTLPPE
LSLQGSIEIRELQVQLNGSVKEGQIVNTATQFPVNLGNIDKAYRITYTTSVQAPTSAPYT
GVVYANEVTLTADQSEYKESDVGRVTVSFNEPLNKSGQESAYDPATQTITWKVQYNYNQQ
TIAQANAWLEDRFDTAKQRLVAGSLNVYEVEIQSDGRPGAKTLAVASDYTVSGAGTGFEE
GFKLQFNSDINKAYEIEYKTQAIPRIYANETVVNTVNTQDGTTKEGRKNIEEVILAKSVK
SEDFNAKEIEWQIVLNRDQKEMTDIVITDDYTGRHMKLVPGSLRITGDQQDQFELAPAVA
DPSDVNFEKGFTIRLKPDGIIDKQHVITYKTSFDPTAGMPTNNEYRNTATLNWKEADVAQ
TAITKSAVVRPQNYTIENGNKRGDYSARDKAMTWTIDVNYNLFDIQHAILKDAYTGNQSF
VDGSLKVYELELKGANNVTSVGDEVTISSAQFQLDPDGKGFTLNLGDIGKKAYRVVYQTS
LDGEFAVEGSYSNHAVLTDGAGGPVRFDKTAAVTPAHGGVYVNKTGHQVGTSDLASWVVN
MNPSQSFVAAGSRLTDTLSDNQILLADSLKLYEVQLPANNSGNISVKAGLVDPSKYELVV
EGNTFTFTFKNDINTAYLLEYQSFINADHGERIENKVEYAGQSSSVVGEGNQSGIRVSMA
GAGGGASTGMGKVKVYKVDDTGQPLEGAVFAIYNASGTILLETLKATDENGMAESSRKYR
LHLTNGVPYRLKEVTAPAGYLPDPNFASASGQTILFKDAEAAFEIINEQIHQGFELTKRD
AADSTKVLEGAVFALYHIQGSTREKLDELTTGVSGRIAKGDLEAGTYELVEIQAPDFYMV
DSTPIPFTITVNQTQIVTLTKTNQIGTGGKLTLTKVNAKDQSPLSRVEFELRDSANSVVD
TGVTNQQGIIEFSNLTYGVYTLVETKAEGFVIENPETKVSITQPETQITIENKENDRSVK
LVKYNASRTQHLQGAVFELRAQSAVMGPDGEWLFNVVAGIDPAALTTDLHGELHVQQLEP
NTYQLIEVKAPSGYQLDQTPVTFEITNQQTEAIVVSKTNQAIPSSGGPSEPYNPGTPSTG
GTPDPTKPGAPVKETPGISVPGKVVTDPSEPAEENGGTGKPQNPAEVTPSAPEAGDGDGT
ETQVTEGDGTGEENVVTPPVGADSESEVSSGNSSHTSAQGMLPKTGEESSIAYTVSGLML
MAIGSTAFLYFRRREKFQH
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacgagtgagcatcatgttgattgcactgttgctggtgacgcaattgctgcaa
gggctggtcttaacatcaacggtgtatgctcaggatgacacaaatcatatgtcagtcggt
acaatgaatgatccatcttcaccatctgcagaggaggagagcaagcttcctgaacatcag
gtagataatggtgctgatgctactgcggatggaaaaacatcgctggagaccgaggagacg
gaacttactgcaactcccgacaaatccgaaacggcaagtgtatctcccttggctgccgct
gccgtagcttcagaaattcaggagaacctgattaccgatgtacaaatgtacaatcagaag
ccggaatacaatggcaacggtcagatcgaagttaaaggagacaagattgaagatattcgt
ccacgaatatcggatgaggttgcagttgttttcaaatgggcgtttgagaatgatgcccac
tcttacggagatggatcgacctttactttccgtttgcctgacaaatttattataggctca
cagctgagaggcaatctggatgggggtgttggcgaatacgtcgtgaacccggacggtaca
attgcatttacttttaatgagatgctcgaacacgcccaattggaagggaacttctatgtg
tggcttaaatttgacgagagcaagatggaagacggactgaaacagaggattgactttagc
ggtgtaggccaaggccctattgatgtaaattttgcaaataccgcaaaggatgaacttcag
aagttcggaaaagcaaacaaaaataatttcaactcggatgagattgaatggacagtagat
tttaaccaaggcgagaagagcatgaccaatgttgttctggaggatacactgccaccagag
ctttcgcttcaggggagtatcgagatccgcgagctgcaggttcagttaaacggttctgtg
aaggaaggccagattgtcaacacagcaactcagttcccagtgaacctgggcaatatcgac
aaagcatatcgcatcacctacacaacaagtgttcaggcaccaacgagtgctccttatacg
ggagtagtgtatgccaatgaggtgacgctgactgcggatcaaagcgagtacaaggaatcc
gatgttggccgtgtgacggtcagtttcaatgaacctctgaacaagtcgggacaagagagt
gcatacgatccggctactcagacgattacttggaaggtgcagtataactataatcagcaa
acgattgcacaagctaatgcgtggctggaggatcgttttgatacggcgaagcaaagactt
gtagcaggatcactgaatgtgtatgaagtcgagattcaatcggatggtcgccctggggca
aaaacgctggctgttgcctctgattacacagtgagtggtgctggcacaggctttgaggag
gggttcaagcttcaattcaacagtgatattaacaaagcttatgagattgaatacaaaacg
caagcgataccgcgtatatacgctaatgagacagtagtgaataccgtgaatacacaggat
ggcacgaccaaggaaggtcgtaaaaatattgaagaagtcattttggcgaagagtgtaaaa
agtgaagatttcaatgccaaagagatcgagtggcagattgtgctgaatcgggatcagaaa
gagatgacggatattgtcatcacggatgattatacaggcagacacatgaagcttgttccg
ggcagtctgcgaatcactggtgatcagcaggaccagtttgagctggcacctgctgtggct
gacccgtcggatgtgaattttgaaaaagggttcacaattcgtctgaagccggacggcatc
attgataaacagcatgtgatcacgtataaaacaagctttgatccaacggcaggcatgcca
acaaacaatgaatatcgcaacacagcaacgttgaattggaaggaagcagacgttgcacag
accgccataaccaaatctgctgtggtcagacctcaaaactatacgattgagaatggtaac
aagcggggggattatagcgccagagacaaagcgatgacctggacaattgatgtgaattac
aatctgtttgatattcagcatgctattctcaaggatgcttatactggaaatcaatccttt
gtggatggatcattgaaggtgtatgagcttgaattgaagggcgccaacaacgttacttcg
gttggggacgaagtcacgatatcatcggcacaattccagcttgacccggatggcaaaggc
ttcacgcttaacctaggtgacatcggtaaaaaggcttaccgcgtagtgtatcaaaccagt
ctggatggagaatttgcagtagagggctcgtacagcaatcatgctgtgctgacagatggt
gcaggcgggcctgtacgttttgataaaacagcagccgttacacctgctcatggcggagta
tatgtgaacaaaacagggcatcaggtagggacatccgatctggcttcatgggttgtaaat
atgaatccgagccagtcctttgttgctgccggttctcgattaaccgacaccttgtccgat
aatcagattttgcttgccgattcattgaagctgtacgaggtgcaattgcctgcaaacaat
tcgggcaatatttcggtgaaggccgggttggttgatccatcgaaatatgagctggtggtg
gagggcaacacctttaccttcacatttaagaacgatataaacacagcatatcttttggag
taccagtcctttattaacgcagatcacggagagagaattgagaacaaggttgaatatgct
ggtcagtcttcatccgttgtgggagaaggcaaccagtcaggtattcgggtttcgatggca
ggtgcaggtggcggtgcatccaccggtatgggtaaagtgaaagtgtataaggtggatgac
accgggcagccactggaaggagctgtctttgccatctacaatgcatccggcacgattctt
ctggaaacgttgaaagcgacggatgagaacggcatggctgaaagcagccggaagtatcgt
ttgcatctgacaaatggtgttccttaccgactgaaggaggttacagcgcctgcaggatat
ctgccagatccgaattttgcttcggcttcaggtcaaaccattttattcaaggatgcagaa
gcagccttcgagatcatcaacgaacaaatccaccagggttttgagctgaccaagagggat
gcagccgactccaccaaggtgctggagggagccgtttttgcgctatatcacattcagggc
tccacgcgtgagaagctcgatgagcttacgacaggagtgagcggcagaattgccaaggga
gatctggaagcaggcacgtatgaattggttgaaattcaggcacccgatttctacatggtg
gatagtacaccgattccattcaccattacagtgaaccagacacagattgtgacacttaca
aaaacaaatcagatcggtacaggaggtaaactgaccctgacaaaagtgaatgccaaggat
cagtctccattaagcagggttgaattcgaactacgtgattctgccaatagcgttgttgat
accggagttacgaaccaacaggggatcattgaattcagcaacctcacttacggtgtgtat
acacttgtagaaacgaaagctgaagggttcgtgattgaaaacccggaaacaaaggtatct
atcactcagccggaaacacagataacgattgaaaataaagaaaatgaccgttcggtaaaa
ctggtgaaatacaatgcaagccgaacacagcatctgcaaggtgcagtctttgaattacgt
gctcaatccgcagtgatggggccggatggagaatggctgtttaatgtggtagccggtatt
gatccggcagcattgaccacggatcttcacggtgaactccatgtgcagcagcttgaaccg
aatacgtatcaattgattgaagtcaaggcaccgtctggataccaattggatcagacgccg
gtgacctttgaaattacgaatcaacaaaccgaggcgattgttgtatccaagacaaatcag
gctatcccgtcatcaggcggaccgagtgagccctataatccgggcacgccaagtacaggc
ggtacaccagatccgaccaagccaggagctcctgtgaaagaaacacccggaatatctgta
ccgggtaaagttgtaacggacccttcagaaccagcagaagaaaatgggggcacaggtaaa
ccgcaaaatcctgctgaagttacaccttcagcacctgaagctggagatggagatggaacg
gagactcaggtgacagaaggcgatggtacaggtgaagagaatgtggttacgccaccagtc
ggagcagattcggaaagcgaggtttcatcggggaacagcagccatacctcagcccaaggc
atgctgccgaagacaggtgaagagagctccatcgcctacaccgtctcaggattgatgctg
atggctattggaagtacagcattcttgtacttcaggcgcagagagaaattccagcactag
DBGET
integrated database retrieval system
