Paenibacillus barcinonensis: HUB98_13710
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Entry
HUB98_13710 CDS
T06922
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUB98_13710 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbac03021
]
HUB98_13710 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_13710 (rpoC)
Enzymes [BR:
pbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUB98_13710 (rpoC)
Transcription machinery [BR:
pbac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUB98_13710 (rpoC)
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUB98_13710 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QKS57257
LinkDB
All DBs
Position
complement(2959258..2962872)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDVDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNNPEWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKD
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNKEEKGTGMVLRTVNEAVSAYQRGTAGLHARVAIP
VKALGKTSFTEEQQKGMLLTTVGKIIFNEIFPASFPYINDATRANLYQGTADHFFVYEKG
ADLREAIMNSPQAGGVGKEYLGSIIARCFEIYHTTETAVILDKIKQLGFTYSTRAGITVA
VSDVVVPDEKTDILKQSEEKAQIVTNQYRRGLITNEERYDRIIDIWSKSKDDITDILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETVRHPETKEIIAGRNELIDSDKAEAIIKAGITKLQIRSVLSCRASHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIREAKDRREIEIQGEAESKVYSVTYGSRVRVSEGMEIEA
GDELTDGSIDPKEMLRIKGVRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGDTTLLPGSFVDTYEYERANKIAILSDKEPAVAKPILLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSIKFAEPEDGQSSVEELEP
VSVD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaatttcgaatacatgaagatcgggcttgcttccccagagaaaatt
cgttcttggtcccgcggagaagtgaaaaaaccggaaacgatcaactatcgtacgttgaaa
ccggaaaaagaagggctgttctgcgaaaagatttttggccctacaaaagactgggaatgt
cattgcggtaaatataaacgcgttcgttataaaggcgttgtctgtgaccgctgtggcgtt
gaagtaacacgtgcgaaagtccgtcgtgaacggatgggccatattgagcttgctgctccg
gtatcgcatatctggtacttcaaaggtattccaagccgtatgggtctcgctttggatatg
tctccgagatctctggaagagatcatttattttgcatcatatgttgtaacagatccagga
gaaactccactggagaaaaaacagctgttgtccgaaaaggaatatcgcagctaccgtgaa
aaatacggctatgggttccaagcaggcatgggtgcagaagcagttaaaaaattgcttcaa
gacctcgatgtagataaagagcttgaattcttgaaggaagagctccgcactgcacaagga
caacgtcgtaaccgtgcaatcaaacgtttggaagtaatcgaagctttccgtaactctggc
aataaccctgagtggatgatcatggatgtacttcctgtcattccgccggagcttcgtccg
atggtgcagctggatggtggacgttttgcaacgtctgacttgaatgacctgtatcgccgt
gtaattaaccggaacaaccgtctgaaacgtctgcttgacctgggcgcaccagatattatc
gtacaaaatgaaaaacggatgctgcaggaagcggttgacgccttgattgataacggtcgt
cgtggacgccctgttacaggtccgggtaaccgtcctttgaaatccctcagccacatgctg
aaaggtaaacaaggtcgtttccgtcaaaacttgctcggtaaacgtgttgactattccggt
cgttccgttatcgttgtcggaccttacctgaaaatgtatcagtgtggtctgccgaaagat
atggcacttgaactgttcaagccttttgtcatgaaagagcttgtgaataaagggcttgcc
cacaatatcaagagcgcgaaacgtaaagtggagcgtgtaagtcctgaagtatgggatgtt
cttgaagaagtaatcaaggagcacccggttcttctgaaccgtgcccctacgcttcacaga
ctcggtattcaagcatttgaaccgattctggttgaaggtaaagcgattcgtcttcacccg
ctcgtatgtacggcgtacaatgccgactttgacggtgaccaaatggccgtgcacgttccg
ttgtctgctgaagctcaagcggaagcacgtatcctgatgctggcatcaggtaacattttg
aacccgaaagatggtaaaccggttgttactccttcccaggatatggtccttggttcatac
tatctgacgatggacaacaaggaagagaagggtactggtatggttttgcgtacggtcaat
gaggctgtatcggcataccaacggggtactgctggactgcatgcacgtgtagctattccg
gttaaggcgcttggtaaaacaagcttcaccgaagaacagcaaaaaggcatgctgctgaca
acagtgggtaaaattatcttcaacgaaattttcccggcaagcttcccttatatcaatgat
gcgactcgtgccaacctgtatcaaggtactgctgatcacttctttgtatatgaaaaaggg
gctgacctgagagaagcgatcatgaattctcctcaagcaggcggtgtcggcaaggaatat
ctgggttcaatcatcgcacgctgctttgaaatttatcatacaaccgaaacagcggttatt
ctcgataaaatcaaacagctcggattcacatactctactcgtgcgggtattacggtagcc
gtgtctgacgttgtggttccagatgagaaaacagacattctgaaacaatccgaggagaaa
gcacaaatcgttacgaatcagtaccgtcgtggtctgattacgaatgaagagcgttatgac
cgcatcattgatatttggtcgaaatccaaagatgacatcacagatatcctgatgaaatcc
atggatcgttacaactcgatcatgatgatggttgactccaaagcacggggtaacaaatcg
caaatcactcaattgggcggtatgcgtggtctgatggccaacccgtctggtcgaattatc
gaactcccaatcaaatcgaacttccgtgaaggtctgacagtactcgagtactttatttcc
actcacggagcgcgtaaaggtctcgcggatacagccctgcgtacagctgactcaggttac
ctgactcgtcgtctcgtagacgtagcccaagacgtaattgtgcgtgaggacgattgtggt
acagataaaggctttaccgttagccgtatccaggatggtaaagaggtcatcgaggatctc
tacgaccgtattgaaggcagatactgcttcgaaactgttcgtcatccggaaacaaaagaa
atcatcgctggccgcaatgagctgattgattctgacaaagcagaagcgattatcaaagct
ggcataaccaaattgcaaatccgctccgttctcagctgccgtgcaagccatggtgtctgc
aagaagtgttatggtcgcaaccttgcgacaggtaaacacgtggagattggtgaagcggtt
ggtatcattgccgcacaatccattggtgagccaggaacacagcttacaatgcgtacgttc
cataccggcggtgtagccggagacgacatcacgcaaggtttgccgcgtatccaggagctc
tttgaggctcgtaatcctaagggtcaagcaacaatcagtgagattgatggtgtggttaaa
gagattcgcgaagcgaaagatcgtcgtgaaatcgaaattcaaggtgaagcggaatccaaa
gtgtactccgttacttacggttcccgtgttcgcgtaagcgaaggcatggaaatcgaagcg
ggtgacgagttgacagacggttccattgatccaaaagaaatgcttcgcatcaaaggcgta
cgtggtgtacagaactacattttgcaggaagtacagcgcgtataccgtaaccagggtgta
gaaatcaatgacaaacacgttgaagtcatgattcgtcaaatgctgcgtaaaatccgtatc
gtggatgcgggagatacgacactgttgccaggatcatttgttgatacgtatgagtacgaa
agagcgaacaaaattgcgattcttagtgataaagagcctgcggttgctaagccaatcctg
ctcggtattacaaaagcatctcttgaaacagactccttcctctctgcggcatcgttccaa
gagacaacacgtgtattgacggatgcagcgattaaaggtaaagttgaccaattgttgggt
ctgaaggagaatgttatcattggtaaattgatccctgcaggtacgggtatgaaccgctac
cgcagcatcaaatttgctgaacctgaagacggccaatcttctgtagaagagctggagccg
gtttcggtagactaa
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integrated database retrieval system
