Paenibacillus barcinonensis: HUB98_13945
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Entry
HUB98_13945 CDS
T06922
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUB98_13945 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_13945 (uvrA)
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUB98_13945 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HUB98_13945 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_29
RsgA_GTPase
AAA_16
nSTAND1
AAA_22
AAA_25
nSTAND3
AAA_33
AAA_23
DnaJ_CXXCXGXG
BCA_ABC_TP_C
cobW
Viral_helicase1
NACHT
AAA_24
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
QKS57296
LinkDB
All DBs
Position
complement(3019921..3022779)
Genome browser
AA seq
952 aa
AA seq
DB search
MASENIVIKGARAHNLKNIDITIPRDKFVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMEKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHP
HCPDHGIEITSQTVEQMVDRIMQYPERTRLQILAPMVAGRKGEHKSVFADVSKQGFVRVR
VNGELRDLSEDIQLEKNKKHTIDVVVDRIVVKEDVQARLADSIETALNLSGGQLLVDIIG
EEELRFSSNFACPVCGFSIDELAPRMFSFNSPFGACPDCDGLGVKMIVDPDLLVPDRSKT
IEEGAFDAWTGGTSTYYPQFLRSVCEHFNIPQDVPVEDLPADQMSKLLQGTGSEKIRFRY
ENDFGQRKEALVTFEGIVNNLERRYRETGSEGIREFIEGYMSAKPCGTCKGQRLKRESLA
VTINDHNMAYVTSLSIGEAGRFFDSLQLTEKEQTIAKLILKEINSRLGFLVNVGLDYLTL
SRAAGTLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLAHMRDIGNT
LIVVEHDEDTMMAADYIIDIGPGAGIHGGTVMSQGTPEEIMNDEKSLTGQYLSGKKFIPV
RTERRGVGDRWLEVRGAKENNLKNLNVKIPVGVFTAVTGVSGSGKSTLINEILYKTLARD
LNRARVRPGQHKEIRGLEHIDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAK
VRGYKKGRFSFNIKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKN
KNIADVLEMTVEDATQFFENIPKIHRKMQTLLDVGLGYINLGQPATTLSGGEAQRVKLAS
ELYRRSTGKTIYILDEPTTGLHVDDIDRLLNVLHRLVDSGESVLVIEHNLDVIKTADYIV
DLGPEGGSGGGTIVATGTPEDIVQVEASYTGKYLKPVLERDTERSRALQMAD
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
ttggcgagcgagaatattgtcattaaaggcgcacgggcgcataacctgaaaaacattgat
attaccattccgcgtgacaagtttgtcgtattgaccggtctgagcggatcaggcaaatcc
tcgctggcctttgatacgatctatgccgaaggacagcggcgttatgtagagtcattgtcc
gcttatgcacgtcagtttctgggccagatggagaagccggatgtggattccattgaagga
ctgtctcctgccatctcgatagatcaaaaaacaacaagtcgtaacccgcgctcgactgtc
gggacggttaccgaaatttatgattatctgcgtcttttgtttgcacgtatcgggcacccg
cattgtccggatcacggcatcgagattacatcgcaaacggtggaacagatggtggaccgt
attatgcagtacccggaacgtacccggctgcagattctcgcaccaatggttgcaggacgt
aaaggtgaacacaaaagtgtatttgctgacgtatccaaacaaggttttgtccgtgttcgg
gtcaatggggaactgcgtgacctgtcagaggacattcaattagagaaaaataaaaaacac
acgattgatgttgtggttgaccgtattgtggtaaaggaagacgttcaggcacgcctggca
gattccatagaaacggcgcttaatttgtccggcggacaactgctggttgacatcattggc
gaagaagagctgcgattcagctcgaactttgcctgcccggtctgcggcttcagcatagat
gagcttgcaccgcgtatgttctcttttaatagtccgtttggtgcttgcccggattgtgac
ggcttgggtgtcaaaatgattgtagacccggatttacttgtaccggatcgcagcaaaaca
atcgaagaaggagcgtttgacgcctggacaggcggaacgtccacgtattatccgcaattc
ctcagatccgtatgtgagcatttcaacattccgcaggatgtgcctgtggaggatctgcct
gccgatcagatgagcaagctgctgcaaggcacaggctcggagaagattcgtttccgctac
gagaatgactttggacagcgcaaggaagcgctagttacgttcgaaggcatcgtgaataat
ctggagcgtcgttatcgcgaaaccggttctgagggcatccgtgagtttatcgaaggatat
atgagcgcgaagccatgtggtacgtgtaaaggacagcgtttgaaacgtgaaagccttgct
gtgacgattaatgatcacaatatggcttatgtaacgagcttgtctatcggtgaagcggga
cgtttctttgattcattacagctgacggagaaggagcagacgattgcgaagctgattctg
aaagagatcaacagccgtctcggcttccttgtcaatgtgggtctcgattacctgacgctt
agccgtgctgccggaacgttatccgggggggaagcgcagcggatcagattggctacacag
atcggttccagtctgatgggggttctctacattctggacgagccaagtatcgggcttcac
cagcgggataatgaccgtttgatctctacgctggcgcatatgcgtgatatcgggaacacg
ttgattgtggttgaacatgacgaggatacgatgatggcggccgactatattattgatatc
gggccaggtgcgggtattcacggcggcacagtgatgtcgcaaggtacacctgaggagatt
atgaacgacgagaaatcgttaacgggtcaatacctcagcggcaagaagtttatcccggtt
cgcaccgagcgtcgaggtgtaggcgatcgctggctggaagtgcgcggggcgaaagaaaac
aacctgaaaaatctgaatgtaaaaattccggttggagtgtttactgcggtgaccggggta
tctggttcgggtaaatctacgctgattaacgagattttgtacaaaacgctggcgcgtgat
ctgaatcgtgcccgtgtacgcccagggcagcataaggagattcgcggactggagcatatt
gataaagtcattgatattgaccagtcgcccatcggccgcacgccgcgctccaatccggcc
acatacacaggtgtgtttgacgatattcgtgacctgtttgcacagaccaatgaagccaag
gtgcgcggatacaaaaaaggccggttcagcttcaatatcaaaggtggacgttgtgaagcc
tgccgcggagacggcattatcaaaatcgagatgcacttcctgccggatgtatacgtgccg
tgtgaagtctgcaagggcaaacggtacaaccgtgaaacgctcgaagtgaaatataaaaat
aaaaatattgcagatgtgctcgaaatgacggtggaggacgcaacccaatttttcgagaac
attccgaagattcaccgcaaaatgcaaacgctgctggatgttggtctgggctacattaat
ctcggtcagcctgcaacgacattgtctggcggtgaagcacagcgtgtgaagcttgcttcc
gagctgtaccgacgcagtaccggcaaaacgatctatattctcgatgagccaacaacgggt
ctgcatgtcgatgatatcgaccgactcctgaacgtgctgcatcgcctcgtggattcaggg
gaatccgtactggtcattgagcataatctggatgtaatcaaaacagccgattatatcgtt
gacctcggtccagaaggtggtagcggcggtggtacgattgtagcgacaggaacaccggag
gatatcgttcaagtggaggcttcatacacaggtaagtatctgaagcctgttctggagcgc
gatacggagcgaagtcgggcgctgcaaatggcggactaa
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