Paenibacillus barcinonensis: HUB98_17295
Help
Entry
HUB98_17295 CDS
T06922
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUB98_17295 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_17295 (mfd)
Enzymes [BR:
pbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUB98_17295 (mfd)
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUB98_17295 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
AAA_22
RecG_dom3_C
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QKS57882
LinkDB
All DBs
Position
3828689..3832216
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFSKDPDFTSITAGVKSGMKEQLVSGLSGSARQIMLAALHQEMDRPLLVVTHN
MFSAQKIAEDLQEALSPERVLIYPANELVAAEAAVSSPETLAQRIEVLVRCAQGFRGIVV
IPFSGVRRYVPLPEVMANAHIQIKQGSTLQLDSFLLEMVTLGYERVERVESRGEMSVRGG
IIDFYPVTSSIAYRVELFDDEIDSIRTFDPADQRSIERIEEITVLPCKELIADRERMEKA
ADTTAILLEQQLEKMTDRQAKLRLREEMHREIELLRQHVYFSEMYKYISPLYPENKTIYD
YMPEDTILVMDEPARLSETSKQLDRDESEWNLHLMQNGKTLPDLPLSADGDELLYERSFQ
TIFMSIFLRQVPHTQPQNILNFISRGMQDFHGQMNVLKAEMERWQKAGVQVLMLANGEER
MDRMRRVLQDYDIPEPEMLNGNLQTGFEMPSIHLAVITEGEMFSQKQRKTRKPIRNIDNA
ERIKSYSELKVGDYVVHQNHGIGKYLGIGTLEVAGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEEKEPKIYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQTSKGYGFDKDSA
EQQEFEDMFPYDETRDQMRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIHVLSRFRSRKEQNETAKGIKSGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQALVREAIERELARGGQVYYLYNRVQGIQEMAAE
ISELVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVTMLGEEPVPSDQWNTTLDLS
IDAYLPSDYIYDSIQKIEIYKKVAVIASFDDAMELEDELVDRFGDLPEAVINLMAVARLK
VYGKIYGIESITQRGDDLTVKFYEGRENAFELSKISHIGNQFERRVQFEQGPHMLIHVKG
KGLGDKQLMELVEKFLESMKTAFKSKGELKDVSKV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcactcatacaggctttttccaaagacccggactttacgtccattacggcc
ggggtcaagtccggcatgaaggagcagctggtttctggcctatccggctcggctcgtcag
attatgctggcagcgctacaccaggagatggaccgtccgctgctcgtcgtaacacataat
atgttttccgcacaaaagattgcagaagatttacaggaagcgctttcacctgagcgggtg
ctgatctatccggccaatgaacttgttgccgccgaggcagccgtatccagtccagagacg
ctcgctcagcgtatagaggtattggtccgctgtgcccaagggttcaggggtattgttgtc
attcctttttccggggtaagacgatatgttcccctgccggaagtaatggcaaacgcgcat
attcagattaaacagggcagtacgcttcaactggactcattcctgctggaaatggtgacg
ctgggatatgagcgtgtggagcgcgttgaatcccgcggtgagatgagcgttcgtggagga
attatcgacttttatccagtgacttcatccattgcttatcgggtggagttatttgacgac
gagattgattcaatccgtacgtttgatccggcagatcagcgttctattgaacggatcgaa
gagatcacagtgctgccatgcaaggaattgattgcagatcgggagcggatggagaaagca
gccgacacgacggcaattctactggagcagcagctggagaaaatgacggatcgtcaggcc
aagctacggctgcgggaagagatgcaccgggagattgagctgttgcgtcagcatgtctat
ttttcggaaatgtacaaatacatctccccgctttatccagaaaataaaacgatttatgac
tatatgccagaagatacaattctggtcatggatgagccggcaagactgtcggaaacctca
aaacaactggacagagacgaatcggagtggaacctgcatctgatgcaaaatggtaaaaca
ttgcctgatctgccgctatcggccgatggggatgagctgctctatgagcgttcgttccag
accatatttatgtcgatcttcctgcgtcaggttccgcatacacagcctcagaacattctg
aactttattagccgtggcatgcaggattttcacggtcagatgaacgtgctgaaggcggag
atggagcgttggcagaaggctggcgttcaggtgttaatgctcgccaatggcgaggagcgc
atggatcggatgcgccgcgtgctacaggattatgacattcccgagccggagatgctgaac
ggcaacttgcaaactggcttcgagatgccctccattcatttggcggttattacggaaggc
gagatgttctcgcagaagcagcgtaaaacccggaagccgattcgaaacattgataatgcc
gagcgcattaaatcctacagtgagctaaaagtaggcgattatgtcgttcaccagaatcac
gggattggtaaatatctggggataggcacgcttgaggtcgctggcattcacaaggactac
atgcacatcctgtatgcaggcggcgacaaattgtctgtgcctattgagcagattgatctg
attcagaagtatgtgggttccgaagagaaggagccgaaaatatacaagctgggcggtaac
gaatggacgcgggttaaaaataaagttcgttcctccgttcaggatatcgctgatgatctg
atcaagctgtatgctgaacgtcaaacatccaaaggatatgggttcgacaaggactccgcg
gagcagcaggagttcgaagacatgttcccttacgatgagacacgtgatcagatgcgtgcg
attgaggaaatcaaaaaagatatggaacaaaaccgtccaatggatcgtttattgtgtgga
gacgttggttacggcaagacggaagtagccattcgtgctgcgttcaaggcagcgattgag
ggcaaacaggtggcggtgcttgtgccgaccacgatattggcccagcagcactatgaaacg
ttccgtgagcgcttctcgggttacccgttcaacatccatgttcttagccgattccgttcc
cgtaaggaacaaaatgagacagcaaagggaattaaatcgggtacagttgatattgttatc
ggcacacaccgcttgctgtcacaggatctggtatttaaggatctcggtctactcattgtc
gatgaagagcagcgcttcggtgtaacccataaggagaagctgaagaagctcaaaaccaac
gtggatgtgcttacgcttacagcgacgccgatcccgcgtacgttgcacatgtcgatgctg
ggtgtgcgtgacttgtctgtcatcgaaacaccgccagagaaccgtttccctgtacaaacg
tatgtagtggagcacagccaggcgttggttcgtgaagcgattgagcgtgaactggcccgc
gggggtcaggtgtactatctctacaaccgcgtgcagggcattcaagagatggctgcggaa
atttcggagctggtgccggaagccaaggtgggcgtagggcatggtcagatgtccgaaacc
gagctggagaagacaattctcgattttctggacggagagtatgacgtattggtgagtacc
agcatcattgagaccggtgtagacattccaaatgtaaatacactgatcgtgcatgatgcg
gataaaatggggctctcgcagctctaccagctgcgcggacgggtaggtcgatccaaccgg
attgcctatgcgtatttcacgtaccagcgggataaagtgctgaccgaagtagcagagaag
cgtctgcaatccatcaaggaattcaccgagctgggttcaggcttcaaaattgcgatgcgt
gacttgtccattcgtggcgcaggtaacctgctcggagcggagcagcatggattcattgct
tccgtcgggttcgatctgtattcacagatgctcgctgaggagatcaacaaacgtaaagtt
acgatgctgggtgaagagccggtgccttcggatcagtggaatactacgctggatctcagt
attgatgcctacttgccatctgactatatttatgacagtattcagaagattgagatttat
aaaaaggtggctgttatcgcttccttcgacgacgccatggagctggaagacgaactggtt
gaccgcttcggtgatctgccagaggccgtcattaacctgatggcagtggcccgcctcaaa
gtgtacggcaaaatctatggaattgagtcgattacacagcgcggggatgaccttacggtg
aagttctatgaggggcgtgaaaatgcctttgagctctcaaaaatctcacacattggaaat
cagttcgaaagacgtgtacaatttgaacaaggaccccatatgctgattcatgttaaaggc
aaggggcttggggataagcaactgatggagctggtagagaaatttctggagtccatgaag
actgcttttaaatcaaagggggaactaaaagatgttagcaaagtataa
DBGET
integrated database retrieval system
