Paenibacillus barcinonensis: HUB98_24135
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Entry
HUB98_24135 CDS
T06922
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUB98_24135 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbac03019
]
HUB98_24135 (recQ)
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_24135 (recQ)
Enzymes [BR:
pbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUB98_24135 (recQ)
Messenger RNA biogenesis [BR:
pbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUB98_24135 (recQ)
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HUB98_24135 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Motif
Other DBs
NCBI-ProteinID:
QKS58993
LinkDB
All DBs
Position
5379373..5381253
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AA seq
626 aa
AA seq
DB search
MSVQTPNLEEAQGLLQKYYGYPDFREGQKKIVSSLLEYEDTLGIMPTGGGKSICYQIPAL
LYPGLTLVVSPLISLMKDQVDALTTAGIAAAYINSTLSGREVNERIRAAQRGELKLLYVA
PERLELDWFRDEMGQLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDSLPERPVVAAFT
ATATPEVMGDILRLLRLQDPQTYVTGLGRDNLAFSVLRGESKKDFVLNYAREHASEPGIV
YAATRKDVDDLHQRLLQAGLPAGRYHAGMTDDERAQSQEAFLYDDIRVMVATNAFGMGID
KSNVRYVLHYSMPKNMEAYVQEAGRAGRDGEPSQCILLFGAQDIITQKFLIEQNPMEGDR
KANDYRKLQQMVDYCYTTRCLRSAQLDYFGEVHEDKPCGICSSCTDDRELVDMTIDAQKI
FSCIHRMRERYGVSLVASVLKGSRAKKVLDYGFDSLPTYGVMGNRTEREIAEIINVMVSE
GYLMLSEGQYPVVRLQPLAVEVLKGQREVMQRVVRKTAATASGTNYGGRRGRDAMPSAVN
ETVFEQLRLIRRDLAAKEHVPSYIIFNDATLREMSVVCPQTERDMLSIKGVGEVKYRKYG
LPFLEFFQRQSGEEVDTDDDAFYEYE
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcaaacacctaatttggaagaagcgcagggcctcctgcaaaaatattatggc
taccccgactttcgcgagggtcaaaaaaagatcgtctccagcctgctcgaatatgaggat
acgctgggcattatgccaaccgggggcgggaagtcgatctgttatcagattcccgctctg
ttatatccggggctgacactggtggtctccccgttaatttcattgatgaaggaccaggtc
gatgcactgacgaccgcgggcattgctgccgcttatattaatagtacgttaagcggccgt
gaagtgaatgagcgcatccgcgcggcgcagcgcggtgagctgaagctgctctacgtcgcg
ccagagcgactggagctggactggttccgcgatgagatggggcagctgcccatctcctgc
gtggctgtggatgaggcccactgtgtgtcacagtggggccatgattttcggacaagctac
ctggcggtagcgccgtttgtggatagcttgccggagcggccggtggttgcggcctttacg
gcgacggcgacgcccgaggtcatgggcgatattctgcggctgctgcgtttgcaggacccg
cagacgtatgtgaccggacttgggcgggataatctggcgtttagcgtgctgcgcggcgag
agcaaaaaggattttgtcttgaactacgcgcgcgagcatgcgagtgagccaggtatagta
tacgctgcgacccgtaaggacgtggacgatctgcatcagcgcctgctgcaggcaggtttg
ccggcaggccgctatcatgcaggtatgacggatgatgagcgggcgcagagtcaggaagct
tttttgtacgatgacatccgggtgatggttgcgacgaacgcgttcgggatggggatcgac
aaatccaacgtgcgttatgtgcttcattacagcatgccgaaaaacatggaggcatatgta
caggaagccggacgtgcgggtcgggatggcgagccgagtcaatgcattttgcttttcgga
gcgcaggacattattacccagaagttcctgattgagcaaaacccgatggagggtgaccgc
aaagccaacgattatcgcaagctgcagcagatggtcgattactgttatacgacccgttgt
ttgcgcagtgcgcagctggattacttcggtgaggtgcatgaggacaagccatgcggcatt
tgcagctcctgtacggacgaccgtgagctagtagatatgacgattgatgcgcaaaaaata
ttcagctgcattcaccgcatgcgtgaacgctatggtgtatctcttgtggcttcggtgctc
aaaggttcgcgtgccaaaaaggtgctggactacggcttcgattccttgccgacatacggg
gtcatgggcaatcgcacggagcgtgaaattgcggagatcatcaatgtcatggtgtctgaa
ggatatctgatgctgtctgaagggcagtatccggtggtgcgtttgcagccgctggcggtg
gaagtgctgaaaggtcaacgcgaagtcatgcaacgtgtcgtacgtaaaacagctgccaca
gcttccggcacaaactacggcggacgccgtggacgtgatgcgatgccttcggctgtgaac
gaaacggtgtttgagcagttgcgcctgatacgccgtgatctggctgcaaaagaacatgtt
ccgtcctacattatcttcaatgatgccaccctgcgcgagatgagtgtggtatgcccgcag
acagaacgtgacatgctgagtattaaaggggtcggggaggtcaagtaccgcaagtacggt
ctgccgttcctggaattcttccagagacaatcgggtgaagaagtggacacggacgatgat
gctttttatgaatatgagtga
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