Paenibacillus barcinonensis: HUB98_27085
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Entry
HUB98_27085 CDS
T06922
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUB98_27085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbac03019
]
HUB98_27085
03009 Ribosome biogenesis [BR:
pbac03009
]
HUB98_27085
Enzymes [BR:
pbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUB98_27085
Messenger RNA biogenesis [BR:
pbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUB98_27085
Ribosome biogenesis [BR:
pbac03009
]
Prokaryotic type
rRNA helicases
HUB98_27085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
CMS1
AAA_22
Flavi_DEAD
GRP
Motif
Other DBs
NCBI-ProteinID:
QKS59510
LinkDB
All DBs
Position
5926086..5927666
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AA seq
526 aa
AA seq
DB search
MTNLNFSDFNLEPLVLQAITELGFEEATPIQSKSIPIALEGKDLIGQAQTGTGKTAAFGI
PLISKISKTDEKIRALIMAPTRELAIQVAEEIEKLTRFKGLRSLPIYGGQDIVRQIRALK
RKPQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMEDIQSILKQVPDDRQT
MLFSATMPPNIQKLAQQFLNNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLLDME
SPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVLVATD
VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGAAWSFVTPREIDHLHFIERV
TRHRIPRKPLPTMAEAVEGKQRVTAERLLEIVQSGELNEYKGIAIQMLEQYDSVQLLSAA
LKLLTGDKKDAQVDLTPEDPIRAKRRRPDVRSGGRKPSGYNGNRSSGSGGGYNRDRNSSS
GGRGGYNRDRNSGGTGSREGGYNRDRKPRPSNNNEGRRPARDNSFE
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttaaatttctcagatttcaatcttgaaccactggtgctgcaagccatcact
gagctcgggtttgaagaagcaacaccgattcaatccaaatcgattccaattgcacttgaa
ggcaaagatttgattggtcaagctcaaacaggtacaggtaaaactgcagcatttggtatt
ccattgattagtaaaatctccaaaacggatgaaaaaatccgcgccctcattatggcacct
acacgtgaacttgcgatccaagttgctgaagagatcgaaaaacttactcgcttcaaaggt
ctgcgctccctgccaatctacggcggacaagatatcgtacgccagattcgtgcactgaaa
agaaaaccacagattatcatcggtacaccaggacgtctccttgaccacatcaaccgtaaa
acaatcaaacttgatgatgtacaaactgtcgtattggacgaagcggatgaaatgctcgac
atgggctttatggaggatattcaatccatcctgaaacaagttccagacgatcgtcaaacg
atgttgttctctgcaacaatgcctcctaacattcaaaaactggctcaacaattcttgaat
aacccagaacacgtttctgttattcctaaacaagtcagcgctccgttgattgatcaggcg
tatatcgaagttcctgagcgccagaaattcgaagcactcagccgtttgctggatatggaa
tctcctgaactggcaattgtattcggacgtacaaagcgtcgcgtagacgaattggctgaa
gctttgcaaaaacgtggatattctgcggatggcctgcatggtgacttgtcacaaaaccaa
cgtgatacggtaatgcgtaagttccgtgacggcagcattgatgtactcgttgcaacagac
gtagcggctcgtggtctcgatgtatcgggcgtaacccacgtagtgaactttgaccttccg
caagatcctgaaagttatgttcaccgtattggtcgtacaggccgtgcgggtaaagaaggt
gcagcatggtctttcgttacaccgcgtgagattgatcacctgcacttcattgagcgcgta
actcgtcaccgtattccgcgtaaaccactgccaacgatggctgaagcggttgaaggaaaa
caacgtgtaacggctgaacgtctcctggagattgttcaatccggcgaactgaacgagtac
aaaggcattgcgattcaaatgcttgagcagtatgattctgtgcaattgctgtctgcagca
ttgaaacttctcacgggcgacaaaaaggatgctcaggttgatctgactccagaagatcca
atccgtgcaaaacgtcgcagaccagatgttcgttctggcggacgtaagccatctggttat
aacggtaaccgcagtagcggcagtggtggtggctacaaccgtgaccgcaacagcagcagc
ggtggacgtggtggctacaaccgtgaccgtaacagtggtggaaccggaagcagagaaggc
ggctacaaccgtgatcgcaaaccgcgcccaagcaacaacaatgagggacgtcgtccagct
agagacaactccttcgaataa
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