Paenibacillus barcinonensis: HUB98_28230
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Entry
HUB98_28230 CDS
T06922
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUB98_28230 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbac03019
]
HUB98_28230 (pnp)
03016 Transfer RNA biogenesis [BR:
pbac03016
]
HUB98_28230 (pnp)
Enzymes [BR:
pbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HUB98_28230 (pnp)
Messenger RNA biogenesis [BR:
pbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HUB98_28230 (pnp)
Transfer RNA biogenesis [BR:
pbac03016
]
Prokaryotic type
tRNA degradation factors
HUB98_28230 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QKS59713
LinkDB
All DBs
Position
6183451..6185553
Genome browser
AA seq
700 aa
AA seq
DB search
MEQRVEMQLGGRKLTLETGRLAKQANAAVKVTYGDTVVLCTVTASSEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNIVMSVDQD
CEPQIAAMIGTSAALSISDVPFSGPIGGVKVGRIDGEFIINPTIAQLEVSDIELVVAGTK
DAIMMVEAEANEVPEEVMLEAIMFGHDEIKNIVTVIEQLVQVAGKEKMEVKLHAVNAEVN
SSVREYASARLVEAVKIAEKHARQDAIDAVNDETVAHFEEKYLETPELLKDVKEVLHDIV
KEEVRRLITHDKVRPDGRGLAEIRPIECDTSLLPRTHGSGLFTRGQTQALSICTLGALGD
VQILDGISLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETDF
PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVSILSDI
QGMEDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRQILSEALAQAKEGRMHILGKMTEVM
KTPREQLSQYAPKITTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSN
QEMNDKAKAIIEGIVREVLVGEIYVGKVKRVEKFGAFVEVLPNKEGLVHISQLSTERVAK
VEDVVAIGDSITVKVTEIDPQGRINLSRKAVLTAEAPAQS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaacagcgtgttgaaatgcagcttggtggaagaaagcttacgcttgaaactgggcgt
ttggccaagcaggcgaatgctgccgttaaggtgacttacggagataccgtcgtattatgt
accgtgacagcatccagtgagccgaaagatttggactttttcccattaacggtgaactat
gaagaaagattgtatgctgtaggtaaaatccctggtggatttattaagcgtgagggcaga
ccatccgagaaagcgattttggcaagtcgtctgacagaccgtccgattcgcccattgttc
ccggaaggtttccgtaatgatgtacaagtattgaacatcgtgatgagtgtggaccaggac
tgcgaaccacaaatcgctgcgatgatcggtacttcggcagcactgagcatctcggatgtt
ccgttcagcgggccgattggcggtgtgaaggttggtcgtattgatggtgaatttatcatc
aatcctaccattgctcagcttgaagtgagcgatattgaactggttgtagccggaacaaaa
gacgcgattatgatggttgaggctgaagcgaacgaagtgcctgaagaagtgatgcttgag
gcaattatgttcgggcatgacgagatcaaaaacattgtaacggtgattgaacagctggta
caggttgcaggaaaagaaaaaatggaagtgaagctccatgctgtaaacgcagaagtgaac
agcagtgtgcgtgagtatgcaagtgcacgccttgtggaagctgttaaaattgcggagaaa
cacgctcgtcaggatgcaattgatgctgtgaatgacgaaacggttgctcattttgaagag
aaataccttgaaacacctgaattgctgaaagatgtgaaagaagtgctgcacgatatcgtc
aaagaagaagtgcgccgtctgatcacacacgataaagtacgtcccgatggacgtggcctt
gccgagattcgtccgattgaatgtgacacttccttgctgccgcgtacacacggttcaggc
ttgttcacacgtggacaaactcaggcacttagcatctgtacacttggtgcgcttggagat
gttcaaattctggacggcatcagtctggaagaaaccaaacgattcatgcatcactacaat
ttcccgccgtttagcgtaggtgaagctcgtccgcttcgtgcgccaggacgtcgtgagatt
ggacatggtgcgttgggtgaacgtgcgctgtccaaagtcattccttcagaaacggatttc
ccttacaccattcgtttggtatcagaagtgctggaatcgaacggttctacgtcccaagca
agtatctgtgcaagcacacttgcaatgatggacgcgggcgtaccgattaaagctccggta
gctggggtagcaatgggtctgatcaaagacggagagcatgtatctattctgagtgatatt
caaggtatggaagatcacctgggtgacatggacttcaaagtagcgggaacacctgatgga
gtaaccgcgattcaaatggacatcaaaattgatggtattgaccgtcaaattttgtccgaa
gcgctggcacaggcgaaagaaggacgtatgcacattttgggtaaaatgaccgaagtgatg
aaaacgccgcgtgagcagttgtcgcagtatgcgcctaaaattacaacaatgcacatcaat
ccggacaaaatccgtgatgttatcggtgctggcggtaaaattatcaataaaatcatcgag
gaaaccggtgttaaaattgatattgagcaggatggccgtgtctttatcgcttcttccaat
caggagatgaatgataaggccaaagcgatcatcgaaggcattgtacgcgaagtgctggtt
ggcgagatctatgtcggcaaagtaaaacgcgttgaaaaattcggtgcattcgttgaagtg
ctgcctaacaaagaaggtttggttcacatctcacaactgtctacagagcgtgtagcaaaa
gtggaagatgtggtggcaatcggtgattcgattacggtaaaagtaaccgagatcgacccg
cagggccgaatcaacctgtcccgtaaagcggtattaacggcggaagctcctgcgcaatcc
taa
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