Roseinatronobacter sp. S2: P8S53_00735
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Entry
P8S53_00735 CDS
T09279
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbae
Roseinatronobacter sp. S2
Pathway
pbae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8S53_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbae03019
]
P8S53_00735
03009 Ribosome biogenesis [BR:
pbae03009
]
P8S53_00735
Enzymes [BR:
pbae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P8S53_00735
Messenger RNA biogenesis [BR:
pbae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P8S53_00735
Ribosome biogenesis [BR:
pbae03009
]
Prokaryotic type
rRNA helicases
P8S53_00735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WFE74957
LinkDB
All DBs
Position
complement(154508..156670)
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AA seq
720 aa
AA seq
DB search
MIPPLSEALAERGFDILTPVQLAVAADDVVTEDLLVSAQTGSGKTVGFGLAIAPTLLGDA
HKFGPAALPLALVVAPTRELAFQVMRELTWLYARTGAVVTSCVGGMDIRTERRTLERGVH
IVVGTPGRLRDHIERGALDLSEIQAIVLDEADEMLDLGFREDLEFMLGQAPVERRTLMFS
ATVSPMIAKLAKQYQRDAKRISTLGGSDQHADISYQALRVSASDSEHAIFNLLRFHEDQS
AIVFANTRAAVSHLTARLANRGLSTVSLSGELSQTERTHALQAMRDGRARVCVATDVAAR
GIDLPNLNLVIHADLPTNTESLLHRSGRTGRAGRKGISALIVPPKAVGKAERLLKWAKIS
AEWTVAPSVEDVLRKDEERLLSDPVWSEPVTDEQAAFAEKLLGLHAPDVIAAAYLRLYQS
RHAAPEELRAPDSKPAAREHREFGPSRWFSLSVGRDDRAEARWLLPLLCRAGNLEKAAIG
AIRVQNNETLVEIAESSAAGFLAALGPDGVLEDGVTARAASGPPSGQHSGDRPREGARDG
ARKPRETRDRGFDAKPKPREAGLARSDRATSPRPEGKPRAKPAYDAAPAAPRAKPAYDPD
AAPRAKPAYDAAPQGERKPRHKGKPAAGAEGRSAGFKSHDAKPAPRSKPKPERADPSSKP
AGKTWQKPAAKPKARPAPADARDSSKRFVPPGMAKADARKPRKPGAGPRPGGRDAPRRGK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgatccctcccctgtccgaggcgctcgcagagcgcggttttgacattcttaccccggtt
caactggccgtggccgctgacgacgtggtgactgaagaccttctggtttcagcgcagacc
ggatcgggcaagaccgttggtttcggtctggccatcgcgccgacgctgttgggggatgca
cataagttcggcccggccgcattgcctttggcgctggttgtggcccccacgcgcgaactt
gcctttcaggtcatgcgcgagttgacatggctttatgcgcgcaccggcgcagttgtcaca
tcctgtgtgggtggcatggacattcgcactgaacgccgcacgctggaacgtggtgtgcat
attgttgtcggcacgccgggtcgtctgcgcgaccatattgaacgcggcgcgctggatcta
agtgaaattcaggccatcgttctggatgaagccgacgaaatgctggatctggggtttcgc
gaggatctggaattcatgctgggtcaggccccggttgaacggcgcaccttgatgttttcc
gcgaccgtgtcgccgatgattgccaagctggccaaacaataccagcgcgatgccaagcgc
atcagcacccttggcggcagtgaccagcatgcagatatttcatatcaggcgctgcgcgtt
tcggcgtccgacagtgaacatgcgatcttcaacctgctgcgctttcatgaagatcaaagc
gccattgtgttcgccaatacccgcgccgctgtcagccatctgaccgcgcgtctggccaat
cgcgggctgtccacggtcagcctgtcgggtgaacttagccagaccgagcgcacgcacgcc
ttgcaagccatgcgcgacgggcgcgcgcgggtctgtgtggccaccgacgtggccgcgcgc
gggattgacctgccgaacctgaatctggtgattcatgcggatttgcccaccaacaccgaa
agcctgctgcaccgttcgggcagaacgggccgcgcgggccgcaagggtatttccgcgctg
atcgtgccgcccaaggccgtgggcaaggccgaacgcctgctgaaatgggccaagatttcg
gcggaatggactgtcgcgccatcggtcgaggatgttttgcgcaaggatgaagaacggctg
ttgtccgatcctgtctggtctgaaccggtcaccgatgaacaagccgcgtttgccgaaaaa
ctgctgggcctgcacgcgccggatgtgattgcggcggcatatctgcggctgtatcagtcc
cgccacgcagcccccgaagaactgcgcgcgcccgacagcaagcctgccgcgcgcgagcac
cgcgaattcgggccaagccgttggttttcgctgtcagtgggccgcgatgaccgcgccgag
gcccgttggctgctgcccttgctgtgccgtgccggtaatctggaaaaagcggccatcggg
gcaattcgggtccagaataacgaaacactggtcgagattgcagaaagcagtgctgcgggt
tttctggcagcacttgggccggatggcgttctggaagatggcgtgaccgcgcgcgcggcc
agtggcccgcccagcggccagcattccggcgacaggccccgcgagggtgccagagatggc
gccagaaaaccgcgcgagacccgcgaccggggctttgacgcgaagcccaagccgcgcgaa
gcgggcttggcgcgcagcgaccgcgcgaccagcccaaggccggaaggcaaaccacgggca
aagcctgcctatgatgccgcgcctgctgccccgcgcgcgaaaccggcctatgatcctgat
gcggccccgcgggcaaaacccgcctatgatgccgccccccagggcgagcgtaagccgcgc
cataagggcaagcctgccgcgggggccgaaggccggtctgcggggttcaagtcacatgac
gcaaaacccgccccgcgcagcaaacccaaaccggaacgggctgacccgtcgtcaaaacct
gctgggaaaacatggcaaaagcctgcggccaaaccgaaggcacggcctgcgcccgcagat
gcgcgcgacagctccaagcgttttgttccccccggcatggccaaggcagatgcccgcaag
ccccgcaaacccggtgcaggtccgcgccccggcgggcgcgatgcgccgcgtcgcggcaaa
taa
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