Roseinatronobacter sp. S2: P8S53_03800
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Entry
P8S53_03800 CDS
T09279
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbae
Roseinatronobacter sp. S2
Pathway
pbae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8S53_03800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbae03019
]
P8S53_03800
Enzymes [BR:
pbae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P8S53_03800
Messenger RNA biogenesis [BR:
pbae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P8S53_03800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WFE75544
LinkDB
All DBs
Position
complement(810495..811835)
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AA seq
446 aa
AA seq
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MTDFTMFGLRPVLMTSLEAQGFGTPTPIQARAIPMIMQGRDILGLAQTGTGKTLAFGLPV
MHALLSGERPAPKTTSALILAPTRELVTQIATTLDNFARKTPLKVQRVVGGAGLNPQIQK
LAKGCDILVATPGRLLDLLERRALTLHATQMLVLDEADQMLDLGFIHALRKIASLLPKER
QTLMFSATMNKQMNEIADAYLDRPERIQVSAPGRPADKIDQSVHFVAQGEKARVLEGYLK
AHPEELALVFSRTKHGAEKLMKLLNGWGIPAGSIHGNKSQGQRERTLQGFREGKVKVLVA
TDVAARGIDIPDMRHVYNYDLPEVPENYVHRIGRTARAGATGRALAFCAPAEMGDLRAIE
KLMRIELAVAGGTPWADDLAGPARAAARKRGPQRGGGGRPQQRSGPSHDGGEGQNRKPRQ
KAFGKRTGSGKPAGQSGGKDRHRRSA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
ttgactgattttaccatgttcgggctgcgcccggtgctgatgacaagccttgaagcccaa
ggctttggcacccccaccccgattcaggcccgcgcgatcccgatgatcatgcaaggccgc
gacatactggggctggcccagaccggcaccggcaaaacgctggcctttggcctgcccgtc
atgcatgccctgctgagtggcgagcggcccgcgccgaaaaccacaagcgcgctgatcctt
gcgcccacacgcgaactggtgacccagatcgcgacaacactcgacaactttgcccgcaag
accccgctgaaagttcagcgcgttgtcggcggtgcggggctgaacccgcaaatccagaaa
ctggccaaaggctgcgatattctggtggcaacaccgggccgtttgctggacctgctggaa
cggcgcgcactgacactgcatgcaacgcagatgctggttctggacgaagccgaccagatg
cttgacctgggcttcatccatgcgctgcgtaaaattgcatccctgctgccgaaagaacgc
cagacgctgatgttctcggcgacgatgaacaagcagatgaacgaaattgccgatgcctat
ctggaccggccagagcgtattcaggtgtccgcaccgggccgccctgccgacaagattgac
caatccgtgcattttgtggcgcaaggcgagaaagcgcgcgtgctggaagggtatctgaaa
gcccatcccgaagaactggcgctggtcttttcacgcaccaaacacggtgccgaaaaactg
atgaaactgctgaacggctggggcattccggccgggtccattcacggcaacaaaagccaa
gggcaacgcgaacgcaccttgcaggggttccgcgaaggcaaggtcaaggtgctggtcgcc
acggatgtggccgcacgcggcatcgacattcccgacatgcgccatgtctataactatgat
ctgccggaagtgccggaaaactacgtccaccgcattggccgcacagcccgtgcaggtgcg
actggccgcgcgcttgcattttgcgcgcccgccgaaatgggggacctgcgcgccatcgaa
aagctgatgcgcattgaactggctgtggccggtggcaccccatgggccgacgatctggca
ggccccgcccgcgccgctgcgcgcaagcgcggcccgcagcgtggcggtggtggccgcccg
cagcagcgctcgggtccgtcacatgatggcggcgaaggtcaaaaccgcaagccacgccaa
aaagcctttggcaaacggacggggtcgggcaaacccgccggacaatccggcggcaaggac
cgccaccgccggtctgcctga
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